PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14220_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ARF | ||||||||
Protein Properties | Length: 813aa MW: 89599.4 Da PI: 6.7659 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.5 | 1.4e-24 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ cra_locus_14220_iso_4_len_2527_ver_3 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWS 198 99*****************************8544444..48******************************* PP HHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 67 eFvkangLkegDfvvFkldgrsefelvvkvfrk 99 Fv+a++L +gD v+F ++++ +l+++++r+ cra_locus_14220_iso_4_len_2527_ver_3 199 VFVSAKRLVAGDAVIFI--WNENNQLLLGIRRA 229 *****************..7888889****997 PP | |||||||
2 | Auxin_resp | 121.4 | 6.6e-40 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpv 72 aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpv cra_locus_14220_iso_4_len_2527_ver_3 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPV 326 79*********************************9789********************************** PP Auxin_resp 73 rWpnSkWrsLk 83 rWpnS+Wrs+k cra_locus_14220_iso_4_len_2527_ver_3 327 RWPNSHWRSVK 337 ********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.03E-48 | 114 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-44 | 119 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-22 | 127 | 228 | No hit | No description |
SMART | SM01019 | 3.2E-25 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-23 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.267 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.2E-35 | 254 | 337 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.925 | 762 | 813 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 813 aa Download sequence Send to blast |
MRLSTTGFTP QPEEGEKKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE 60 VDAQIPNYPG LPAQLICQLH NVTMNADVET DEVYAQMTLQ PLSPQEQKDV CLLPAELGSA 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELIA KDLHGNEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD AVIFIWNENN QLLLGIRRAS RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYAKAVYH TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSPF SLRLKRPWPS GLPSFPGLNS GDVALNSQLS WLHGDIGDQG IQSLNFQGFS 420 ASPWMQPRLD ASMLGLQPDI YQAMAASALQ DTRSLDPSKV ANQSLLQFQH NVSSGSTSLL 480 QSQMLQQPHS EQNFIQSFPD NQVIAQAQIL QQQLQRRLSN GDQQQQLRQQ VQQPQQLHSQ 540 FQQQQLTKPI SNLSQIESST QSQFPPLQGL ASSCPLQQTF SDINHFTASS NSPMPSLLNS 600 FSRDGASQLL NLHGMNSLVS TSPSSKRVAL DSQISSRAAA QSAVSQNDNV ATPNSKIADL 660 STFFPPVTGR EFSQFQSIND TQNSALFGLN TDSSIMLQNG MPHLMNGGSE NESLSMPFAT 720 STYTSGGTDF PLNSDMTTSS CVDESGFLQS SENVDQGNPP TRTFVKVHKS GSFGRSLDIS 780 KFSSYHELRS ELARMFGLEG LLEDPQRSGW QLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 16 | 358 | 47 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027065054.1 | 0.0 | auxin response factor 6-like | ||||
Refseq | XP_027065055.1 | 0.0 | auxin response factor 6-like | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A068V5M4 | 0.0 | A0A068V5M4_COFCA; Auxin response factor | ||||
STRING | XP_009757615.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2368 | 24 | 52 |
Publications ? help Back to Top | |||
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