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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_14216_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WOX | ||||||||
Protein Properties | Length: 199aa MW: 22438.9 Da PI: 5.3657 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.2e-20 | 98 | 160 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 rr+R+++t++ql++Le++F k ++p+ ++ +e++++l +++e +V++WFqNrRa+ kk cra_locus_14216_iso_1_len_611_ver_3 98 RRQRWNPTPDQLHILERVFDKegIKTPNPQKVKEITAELanhgQISEPNVYNWFQNRRARLKK 160 89******************8679************************************997 PP | |||||||
2 | Wus_type_Homeobox | 91.7 | 6.9e-30 | 98 | 162 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RW+Ptp+Q++iLe++++ +G++tPn +++++itaeL+++G+i++ NV++WFQNr+aR ++kq cra_locus_14216_iso_1_len_611_ver_3 98 RRQRWNPTPDQLHILERVFDkEGIKTPNPQKVKEITAELANHGQISEPNVYNWFQNRRARLKKKQ 162 589****************989****************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.14E-17 | 91 | 165 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-16 | 91 | 169 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.981 | 95 | 161 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-12 | 97 | 165 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.46E-12 | 98 | 162 | No hit | No description |
Pfam | PF00046 | 4.2E-18 | 98 | 160 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MERNKQLAAP PPCPPQPQAA AEELNGAGIY VKVMTDEQIE LLGKQIAAYA TISEQLEELH 60 RSLCCSQNDD QFSGGLMRIG NPYSTSLMAS NSSQKLSRRQ RWNPTPDQLH ILERVFDKEG 120 IKTPNPQKVK EITAELANHG QISEPNVYNW FQNRRARLKK KQMIESESNN EQSGEADHQK 180 VVVESLSGEE FCQQNDVVX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 161 | RRARLKKKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121485.1 | 7e-56 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 1e-46 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A068V2Q1 | 2e-54 | A0A068V2Q1_COFCA; Uncharacterized protein | ||||
STRING | XP_006425279.1 | 1e-50 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA22020 | 2 | 2 |
Publications ? help Back to Top | |||
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