PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13944_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 678aa    MW: 73617.1 Da    PI: 6.7096
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13944_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23110211199
                                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                                           f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+
  cra_locus_13944_iso_1_len_2730_ver_3 110 FAKTLTQSDANNGGGFSVPRYCAETIfprldynADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWS 180
                                           89****************************996445444..8999**************************** PP

                                           HHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                    B3  67 eFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                            Fv+ ++L +gD++vF   + +++ l+v+++r+
  cra_locus_13944_iso_1_len_2730_ver_3 181 TFVNHKKLVAGDSIVFL--RAENGDLCVGIRRA 211
                                           *****************..4488999****997 PP
2Auxin_resp108.95.4e-36276359183
                            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpv 72 
                                           aa+ a+++ +FevvY+Prast+eF+vk++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+
  cra_locus_13944_iso_1_len_2730_ver_3 276 AATPAANGRPFEVVYYPRASTPEFCVKASLVKAALHIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPI 348
                                           677899******************************************************************* PP

                            Auxin_resp  73 rWpnSkWrsLk 83 
                                            Wp+S+Wr+L+
  cra_locus_13944_iso_1_len_2730_ver_3 349 LWPDSPWRLLQ 359
                                           *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-38100214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-29104213IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-21109210No hitNo description
PfamPF023621.3E-21110211IPR003340B3 DNA binding domain
SMARTSM010191.8E-21110212IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197110212IPR003340B3 DNA binding domain
PfamPF065073.1E-31276359IPR010525Auxin response factor
PROSITE profilePS5174517.77592672IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MKETEKCLDS QLWHACAGSM VQMPQVNTKV FYFPQGHAEH ACGSVDFRTC PRLPPYIPCR  60
VTGVKFMADS ETDEVFAKIQ LIPFGGNEAD SEDGAAGINE SDNQEKPASF AKTLTQSDAN  120
NGGGFSVPRY CAETIFPRLD YNADPPVQTI LAKDVHGETW KFRHIYRGTP RRHLLTTGWS  180
TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGGGPE SSSGWNPAGG NSMIPYGGFS  240
AFLREDENKL MRNGNGSNGG NIMGRGKVKA ESVVEAATPA ANGRPFEVVY YPRASTPEFC  300
VKASLVKAAL HIRWCSGMRF KMPFETEDSS RISWFMGTIS SVQVADPILW PDSPWRLLQV  360
TWDEPDLLQN VKRVSPWLVE LVSNMPTIHL SPFSPPRKKL RLPQHSEFPL DAQVPIPTFS  420
GNHLLGPNGP FGCLPDNIPA GMQGARHAQY GLSLSDIQFN KLQSGLFPVG LQPLGQTAIS  480
NRHPNCPIVD KPSSSGNVSC LLTMGSPAQP SKKFVNGKTP QFILFGQPIL TEQQISLSGS  540
GGDVSPLGTG NSSSDGNADK LGNTSDGSGS ALNVQAIQER SSCEGFEPNL ETGHCKVFVE  600
SEDVGRTLDL SLLGSYEELY GKLASMFSIH SSDILNHVLY RDATGAVRQL GDEPFSDFMK  660
TARRLTILTD SSSDNIGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-77838051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542732.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G2VZR80.0A0A2G2VZR8_CAPBA; Auxin response factor
TrEMBLA0A2G3BJ950.0A0A2G3BJ95_CAPCH; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]