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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13894_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 353aa MW: 40131.3 Da PI: 6.1096 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5e-18 | 61 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll++++ +G g+W++ a++ g++Rt+k+c++rw++yl cra_locus_13894_iso_4_len_1237_ver_3 61 RGPWTLEEDNLLIQYISCHGEGRWNKLAKCAGLKRTGKSCRLRWLNYL 108 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.141 | 56 | 112 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 58 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 60 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 61 | 108 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.12E-24 | 62 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.96E-12 | 63 | 108 | No hit | No description |
PROSITE profile | PS50090 | 5.633 | 109 | 167 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-9 | 112 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 58 | 113 | 189 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
RPGDSSALCT IGSNHLNFLS LKLSQYYSSK IPTMHNKGFS RNVDSNGNAN EEDSTTVDLR 60 RGPWTLEEDN LLIQYISCHG EGRWNKLAKC AGLKRTGKSC RLRWLNYLKP DIKRGNLTPQ 120 EQLLILELHS KWGNRWSXXX XXXXXXXXXX XXXIGEQGCK NKQDXLNIDS NSRKFLEAIR 180 RYWMPRLLEK VDQNSSLSSS SNSSSNNFSS NSSTENLDHF TAPAPSLLKT HQTSNLQSSI 240 SPNSIKFAET SQSLMTNSNM GSSNSPRKTQ LTAEIVENQT TPVQTYGYND ANKVNSALIQ 300 EEEFSHYHPE MSELFESECQ IEETDWFDDE ISAATLWNMD EFWCFRKPAE AGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-15 | 58 | 137 | 24 | 102 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027099529.1 | 3e-86 | transcription factor MYB62-like | ||||
Refseq | XP_027154094.1 | 3e-86 | transcription factor MYB62 | ||||
TrEMBL | A0A068TWL8 | 2e-76 | A0A068TWL8_COFCA; Uncharacterized protein |