PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13772_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Dof | ||||||||
Protein Properties | Length: 313aa MW: 34845.7 Da PI: 7.0168 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.8 | 3.3e-40 | 52 | 112 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s cra_locus_13772_iso_1_len_1083_ver_3 52 HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKIS 112 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-28 | 46 | 106 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.7E-34 | 53 | 110 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.189 | 56 | 110 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 58 | 94 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGLTSLQVCM DSADWLQGTI HEEGGMDSSS PSAGDMLACS RPLIERRLRP QHDQALKCPR 60 CDSTHTKFCY YNNYSLSQPR YFCKTCRRYW TKGGTLRNIP VGGGCRKNKK ISTKKSSNDP 120 SINQINPGNS SINSSSNNNN NNNPTDLQLS FPHDQVQFSH LNNLLGNPNF MMLDQNPPID 180 FMENKLYDNF GSSIGDHFNN NNNATNFHNL SAQFGMMMSS STSMDDHNGA GNGIMDQRLM 240 LPYEGHHHED PILMNALDVK PNTKLLSLEW HNHHQDQAAG KDNFGYLNGV NIGPWTPAGL 300 MNGYGSSTTN PLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015579469.1 | 1e-120 | dof zinc finger protein DOF5.6 | ||||
Swissprot | Q9FM03 | 1e-51 | DOF56_ARATH; Dof zinc finger protein DOF5.6 | ||||
TrEMBL | A0A1Q3B787 | 1e-123 | A0A1Q3B787_CEPFO; Zf-Dof domain-containing protein | ||||
STRING | cassava4.1_012138m | 1e-118 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4895 | 22 | 40 |
Publications ? help Back to Top | |||
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