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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1368_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 178aa MW: 20651.7 Da PI: 9.2865 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84 | 3.1e-26 | 16 | 100 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.........kgrapkge 117 ++e ewyfF++rdk+y++g+r+nr+t+sgyWkatg +++++++g ++g k+ Lvfy + ++++++ cra_locus_1368_iso_6_len_1138_ver_3 16 NDEGEWYFFTERDKRYPNGERPNRSTRSGYWKATGARRKIVDNEGIEIGNKRPLVFYqgkhkdnreRSSKEEPK 89 4566*****************************************************77776665546778889 PP NAM 118 ktdWvmheyrl 128 ktdW+m ey++ cra_locus_1368_iso_6_len_1138_ver_3 90 KTDWIMYEYQV 100 *********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.561 | 1 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-27 | 15 | 135 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-13 | 21 | 100 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MELLLIISFC AACYPNDEGE WYFFTERDKR YPNGERPNRS TRSGYWKATG ARRKIVDNEG 60 IEIGNKRPLV FYQGKHKDNR ERSSKEEPKK TDWIMYEYQV HDPTTTTSNS NRRKRDEFEN 120 TTMRLDGXVL CKISRSGRSF KSQENERNNV KAEAIPSTSY PTNIENILAA AAGSNPSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-23 | 18 | 135 | 70 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-23 | 18 | 135 | 70 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-23 | 18 | 135 | 70 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-23 | 18 | 135 | 70 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-23 | 18 | 135 | 73 | 167 | NAC domain-containing protein 19 |
3swm_B | 2e-23 | 18 | 135 | 73 | 167 | NAC domain-containing protein 19 |
3swm_C | 2e-23 | 18 | 135 | 73 | 167 | NAC domain-containing protein 19 |
3swm_D | 2e-23 | 18 | 135 | 73 | 167 | NAC domain-containing protein 19 |
3swp_A | 2e-23 | 18 | 135 | 73 | 167 | NAC domain-containing protein 19 |
3swp_B | 2e-23 | 18 | 135 | 73 | 167 | NAC domain-containing protein 19 |
3swp_C | 2e-23 | 18 | 135 | 73 | 167 | NAC domain-containing protein 19 |
3swp_D | 2e-23 | 18 | 135 | 73 | 167 | NAC domain-containing protein 19 |
4dul_A | 1e-23 | 18 | 135 | 70 | 164 | NAC domain-containing protein 19 |
4dul_B | 1e-23 | 18 | 135 | 70 | 164 | NAC domain-containing protein 19 |