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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1368_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 1123aa MW: 127478 Da PI: 6.7173 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.1 | 3.4e-40 | 910 | 1045 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 lp GfrF P d el+ +yL kk+++ +l+ ++ik+v++y+++P++L +++ ++e ewyfF++rdk+y++g+ cra_locus_1368_iso_4_len_3737_ver_3 910 LPSGFRFCPYDIELIRDYLMKKIAHPQLNW-DHIKQVQLYDCDPSQLAACYPNDEGEWYFFTERDKRYPNGE 980 699**************************9.89**************988888888**************** PP NAM 73 rknratksgyWkatgkdkevlskkgelvglkktLvfy.........kgrapkgektdWvmheyrl 128 r+nr+t+sgyWkatg +++++++g ++g k+ Lvfy + ++++++ktdW+m ey++ cra_locus_1368_iso_4_len_3737_ver_3 981 RPNRSTRSGYWKATGARRKIVDNEGIEIGNKRPLVFYqgkhkdnreRSSKEEPKKTDWIMYEYQV 1045 *************************************77776665546778889*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.10 | 2.4E-11 | 172 | 402 | IPR011990 | Tetratricopeptide-like helical domain |
SMART | SM00028 | 300 | 243 | 276 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 180 | 292 | 325 | IPR019734 | Tetratricopeptide repeat |
SuperFamily | SSF48452 | 3.8E-20 | 309 | 453 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS50005 | 5.546 | 334 | 367 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 45 | 334 | 367 | IPR019734 | Tetratricopeptide repeat |
Pfam | PF13374 | 0.018 | 340 | 372 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS50005 | 5.458 | 416 | 449 | IPR019734 | Tetratricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 5.0E-22 | 427 | 666 | IPR011990 | Tetratricopeptide-like helical domain |
SMART | SM00028 | 230 | 454 | 487 | IPR019734 | Tetratricopeptide repeat |
SuperFamily | SSF48452 | 3.8E-20 | 494 | 570 | IPR011990 | Tetratricopeptide-like helical domain |
SMART | SM00028 | 15 | 496 | 529 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50293 | 11.888 | 496 | 654 | IPR013026 | Tetratricopeptide repeat-containing domain |
PROSITE profile | PS50005 | 8.614 | 496 | 529 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 63 | 537 | 570 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50005 | 5.281 | 537 | 570 | IPR019734 | Tetratricopeptide repeat |
SuperFamily | SSF48452 | 1.39E-14 | 540 | 656 | IPR011990 | Tetratricopeptide-like helical domain |
Pfam | PF13424 | 8.9E-9 | 547 | 608 | No hit | No description |
SMART | SM00028 | 41 | 579 | 612 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50005 | 6.667 | 579 | 612 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50005 | 6.048 | 621 | 654 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 12 | 621 | 654 | IPR019734 | Tetratricopeptide repeat |
Pfam | PF13181 | 0.0049 | 622 | 649 | IPR019734 | Tetratricopeptide repeat |
SuperFamily | SSF101941 | 3.01E-43 | 900 | 1080 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.606 | 910 | 1081 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-20 | 911 | 1045 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1123 aa Download sequence Send to blast |
XNRDRRRRQR NGYNRDRRPR GRQREPRQTP ASPSCSAVLQ NLKKKVFQRV LPGGEHLLYR 60 TEFLGSKSTM KRVQSKLIPA LQQLTRTSFS FLERDSVFHF SSVSSHSIVN EPSQSYSSET 120 HPKPCTKTPA LLFSNAKGRQ SLQNFNSLAD QAPSSHQMSS RQRKVLERSQ LEEAFESAET 180 TEEMLKAFED MQANFDEMGL GLACLKLGLK LDQEGEDPEK AFSFANRALN VLDKDDKPTL 240 PLAMTLQLLG SVSFSLQKFS DSLGYLNRAN RILGRLSEEG SFSYEDIGPV IHAVQSELFN 300 TKTAMGRREE AIANLRMAVD IKEKMLGKDS KELGKANRDV ARAYVAVLNF KEALTFCLKA 360 LDIHKSLFGH NSVEVAHDRK LLGDIYTGLE EHETALEQNE LSQRVLKNWG CHSELLRAEI 420 DASNMQIALG RYDEAINTLK SVVQKTDKES EDRSMIFISM AKALCNQEKF SDSKRCLEIA 480 SGILEKKVAS LPVVVAEAFI EISMLYETMN EFETAISLLR RALVMVEKIP EEQHSVGSVS 540 ARIGWLLLLT GKVEQAIPYL EDAAERLKES FGSKHYGVGY VYNNLGAAYL ELDRPQSAAQ 600 VFAYAREIMD VSLGPHHADS IEACQNLSKA YAAMGSYQLA INFQEKVIEA WEGHGQSAED 660 ELKEAHRLLE QVKKKAVDAS SNESLMEAFP LAHLTEGAST SKSXKWYLSW SSRFKMNMNL 720 IIYGKGAEXD YTIFVLVCFL LQFKALMYLE TXFLWGMSPL PQPDFWEDKF INRWEVDLGK 780 EQVIVHRTXX NAQDMWDLER SFAGKMRSEF SSKLKPGNGQ PTLASSGGGG EIGGIAALDN 840 YSLFGDQQGH DHDIINNINI DHCMSGFYDH ENLFLDQYYE PIQAVPVSDV PDVHVHVVNN 900 NNINNERMML PSGFRFCPYD IELIRDYLMK KIAHPQLNWD HIKQVQLYDC DPSQLAACYP 960 NDEGEWYFFT ERDKRYPNGE RPNRSTRSGY WKATGARRKI VDNEGIEIGN KRPLVFYQGK 1020 HKDNRERSSK EEPKKTDWIM YEYQVHDPTT TTSNSNRRKR DEFENTTMRL DGXVLCKISR 1080 SGRSFKSQEN ERNNVKAEAI PSTSYPTNIE NILAAAAGSN PSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-32 | 907 | 1080 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-32 | 907 | 1080 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-32 | 907 | 1080 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-32 | 907 | 1080 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-32 | 907 | 1080 | 17 | 167 | NAC domain-containing protein 19 |
3swm_B | 7e-32 | 907 | 1080 | 17 | 167 | NAC domain-containing protein 19 |
3swm_C | 7e-32 | 907 | 1080 | 17 | 167 | NAC domain-containing protein 19 |
3swm_D | 7e-32 | 907 | 1080 | 17 | 167 | NAC domain-containing protein 19 |
3swp_A | 7e-32 | 907 | 1080 | 17 | 167 | NAC domain-containing protein 19 |
3swp_B | 7e-32 | 907 | 1080 | 17 | 167 | NAC domain-containing protein 19 |
3swp_C | 7e-32 | 907 | 1080 | 17 | 167 | NAC domain-containing protein 19 |
3swp_D | 7e-32 | 907 | 1080 | 17 | 167 | NAC domain-containing protein 19 |
4dul_A | 5e-32 | 907 | 1080 | 14 | 164 | NAC domain-containing protein 19 |
4dul_B | 5e-32 | 907 | 1080 | 14 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027151617.1 | 0.0 | protein KINESIN LIGHT CHAIN-RELATED 1 | ||||
TrEMBL | A0A068U633 | 0.0 | A0A068U633_COFCA; Uncharacterized protein | ||||
STRING | XP_009790958.1 | 0.0 | (Nicotiana sylvestris) |