PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13583_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 750aa    MW: 84493.5 Da    PI: 5.1712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13583_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.32.2e-1123767471373
                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 
                                           l++lL++cA+ v+s+d + a + L ++++ +sp+gd+ qRla +f+++L+arla+++++ly+al++++ s   
  cra_locus_13583_iso_1_len_2803_ver_3 376 LRTLLISCAQSVASDDRKTAYEQLRQIRQYSSPTGDAYQRLANVFANGLEARLAGTGTQLYAALASKRIS--- 445
                                           6789************************************************************999999... PP

                                  GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146
                                            +e+l+a++++  ++P+ ++s + aN++Il a+++++++Hi+Df+i +G+QWp L++ L+  ++gpp+lRiTg
  cra_locus_13583_iso_1_len_2803_ver_3 446 AAEKLKAYQVYLSACPFKNISIFFANKMILHAASNAKTLHIVDFGILYGFQWPILIRHLSLLTNGPPRLRITG 518
                                           9************************************************************************ PP

                                  GRAS 147 vgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217
                                           +++p++g   +e++eetgerLa+++++++vpfe+++++++++e+++le+L++  +E +aVn+ ++  +llde+
  cra_locus_13583_iso_1_len_2803_ver_3 519 IERPQPGfrPAERVEETGERLARYCRRFNVPFEYKAIAVQNWETIKLEDLKIAGDEFVAVNCLFRFTNLLDET 591
                                           ************************************************************************* PP

                                  GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                                           v ++s+rd+vL+l+++++P+++v +  + +++++ F++rf eal +ys+lfd+++a+lpr++++ri+ E+e+ 
  cra_locus_13583_iso_1_len_2803_ver_3 592 VIVDSPRDAVLRLIRRMKPDIFVNAVVNGSYSAPFFVTRFREALFHYSSLFDMFDATLPRDDQHRINFEQEFY 664
                                           ************************************************************************* PP

                                  GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                                           gre+ nv+aceg er+er et+++W++r  +aGFkp+pl+++  ++ ++ ++  + + +  +e+ +++++gWk
  cra_locus_13583_iso_1_len_2803_ver_3 665 GREAINVIACEGPERVERPETYKQWQSRQLRAGFKPLPLKQELLDKLRCKVKSGYHKDFVFDEDGNWMLQGWK 737
                                           *****************************************************99888*************** PP

                                  GRAS 364 drpLvsvSaW 373
                                           +r + + S+W
  cra_locus_13583_iso_1_len_2803_ver_3 738 GRIISASSCW 747
                                           ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.357350728IPR005202Transcription factor GRAS
PfamPF035147.5E-110376747IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDPRFGGFPD SVGAFKLDDE VVLSISDETP SLSDVLKFKE QPLDFNFMNN TSFPPTVDTG  60
NLAPSSSISS EVDSPDDNDP DPVLKYLNQI LLEENLDERP SMFHDPLALQ AAEKSFYDVL  120
GQNYPRPPYQ LDQNADSPDS LFGSSSDYST TSSGTSGKST DPHWIADPRE NRSSGTQNLA  180
RDNSFHSSSQ ISSQLAYNSV NSFSSSRNER FDSLSYANRI PSIFSDADSI LQFKKGMEEA  240
SKFLPTGNQL NIDLDSYQLP PKSDQVPPEP VIKVEKDDSP NALRGKKHLH RQESDLEEQR  300
SSKQAAVYVE EAELSEMFDR VLLYTDANGN STWCCPDASG PNGDNKATQQ NELPNQSSGT  360
KIRERNQGSK TEAVDLRTLL ISCAQSVASD DRKTAYEQLR QIRQYSSPTG DAYQRLANVF  420
ANGLEARLAG TGTQLYAALA SKRISAAEKL KAYQVYLSAC PFKNISIFFA NKMILHAASN  480
AKTLHIVDFG ILYGFQWPIL IRHLSLLTNG PPRLRITGIE RPQPGFRPAE RVEETGERLA  540
RYCRRFNVPF EYKAIAVQNW ETIKLEDLKI AGDEFVAVNC LFRFTNLLDE TVIVDSPRDA  600
VLRLIRRMKP DIFVNAVVNG SYSAPFFVTR FREALFHYSS LFDMFDATLP RDDQHRINFE  660
QEFYGREAIN VIACEGPERV ERPETYKQWQ SRQLRAGFKP LPLKQELLDK LRCKVKSGYH  720
KDFVFDEDGN WMLQGWKGRI ISASSCWAPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4338374926380Protein SCARECROW
5b3h_A4e-4338374925379Protein SCARECROW
5b3h_D4e-4338374925379Protein SCARECROW
5hyz_A3e-433807478374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027158482.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A068ULG00.0A0A068ULG0_COFCA; Uncharacterized protein
STRINGXP_009606498.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]