PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13570_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 273aa MW: 29585.3 Da PI: 8.796

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13570_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	7.8e-06	78	100	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F ++nL+ H+ t H cra_locus_13570_iso_1_len_815_ver_3 78 SCPECGEIFMKPENLQLHQATrH 100 8******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	77	100	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.141	77	105	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.45E-13	102	271	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.3E-9	103	254	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
XGRGLNNNGS DQPIVSSNSL ISTTTTSAGN SNYSPLISNG SFKAMPFRKF SGCYECRMVV 60 DPVLGMTRDP SLRATICSCP ECGEIFMKPE NLQLHQATRH AVSELGPEDT SKNIVEIIFQ 120 SSWMKKQTPI CKIDRILKVQ NTSKTISRFE EYRETIKSKA TKLPKKHPRC STTFICSLGL 180 NGSSNLCNSI PHCGMCSIIK NGFKATGDDA GKGILTTATS GKAHDSAVVA SEDEKRAMLV 240 CRVIAGRVKK NLEGSFEDYD SVAAASGVYS NLX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027149240.1	1e-141	uncharacterized protein LOC113749628
TrEMBL	A0A068UVV8	1e-137	A0A068UVV8_COFCA; Uncharacterized protein
STRING	EMJ25536	1e-137	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10723	15	17