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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13469_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 324aa MW: 36055.4 Da PI: 7.1416 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.4e-05 | 173 | 192 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ cra_locus_13469_iso_3_len_969_ver_3 173 FSCPLCFKTFNRYNNMQMHM 192 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.7 | 9e-05 | 257 | 279 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ cra_locus_13469_iso_3_len_969_ver_3 257 FMCRKCGKAFAVRGDWRTHEKNC 279 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.61 | 173 | 195 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.66 | 173 | 200 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 173 | 192 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.1E-7 | 173 | 195 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 175 | 195 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.1E-7 | 252 | 277 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 255 | 277 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 49 | 257 | 277 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.808 | 257 | 277 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
XKPSSSSSSS SLYPNNNFNF YYSNTNNINY NYHHHHQYSS SSSPPSPPIR EALPLLGSSP 60 ARPDPAPAPE DQDSSSSAME VESFSACDGD HDDTVTVALN LGLPNHHPSS LISSDHHADL 120 ISSALISSST DHITDQLEVA ANGILTQAPA STLHKGQYWI PTPAQILIGP TQFSCPLCFK 180 TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAAGCRNNI DHPRAKPLKD 240 FRTLQHIIKE NMXIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH 300 IKAFGNGHAA YGIDSFEEEE EEDX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00197 | DAP | Transfer from AT1G51220 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021278475.1 | 1e-142 | zinc finger protein WIP2-like | ||||
Swissprot | Q8W031 | 1e-124 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | A0A061GTW4 | 1e-140 | A0A061GTW4_THECC; C2H2-type zinc finger family protein | ||||
STRING | EOY32602 | 1e-141 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Publications ? help Back to Top | |||
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