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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
cra_locus_13469_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family |
C2H2 |
| Protein Properties |
Length: 203aa MW: 23372.8 Da PI: 8.7876 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_13469_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.8 | 4e-05 | 52 | 71 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
cra_locus_13469_iso_1_len_605_ver_3 52 FSCPLCFKTFNRYNNMQMHM 71
89*****************9 PP
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| 2 | zf-C2H2 | 15.5 | 4.8e-05 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +Cgk F + + ++H +++
cra_locus_13469_iso_1_len_605_ver_3 136 FMCRKCGKAFAVRGDWRTHEKNC 158
89*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 203 aa
Download sequence Send
to blast |
XXYCDRSFKY HITDQLEVAA NGILTQAPAS TLHKGQYWIP TPAQILIGPT QFSCPLCFKT 60
FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAAGCRNNID HPRAKPLKDF 120
RTLQHIIKEN MXIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI 180
KAFGNGHAAY GIDSFEEEEE EDX
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
