PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13468_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

M-type_MADS

Protein Properties

Length: 351aa MW: 40329.4 Da PI: 8.082

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13468_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.8	1.6e-19	10	52	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+nk r vtf kRr+g+ KKA+ELS+LC+++v +ii+++++ cra_locus_13468_iso_1_len_1190_ver_3 10 LISNKKSRRVTFEKRRKGLEKKAHELSTLCGVKVGLIIYGPKD 52 59**************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.792	1	51	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-19	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.31E-23	2	90	No hit	No description
SuperFamily	SSF55455	8.89E-20	2	100	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-12	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-19	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-12	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-12	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGRAKAGLEL ISNKKSRRVT FEKRRKGLEK KAHELSTLCG VKVGLIIYGP KDTTSHGPTE 60 PNIWPENHQH IQTLINVYKQ ENLEDRRRRT TDLSMFYRDR TRKAEEELNK LHKKNVESKH 120 PTWDEHYDTL SSEELKQFGG LLETKLEAMK SRFDFMKGTQ NYFAESAAIG ADDSISNCMM 180 NSIDQNSSQL QSQDQNSYLV QSLFRRSSMQ LEIIQPQQAV VSGFTLPQYG GDIVPFHKSF 240 NALNANTMPN QKRMILMDEG GCSTSNLAAA AYNTEKSQVQ QGTYSNQAAA VMPEYVEGNQ 300 FENPVRYYFP AMQPMPFYVQ YPLHTTTEIQ KAQMEQYYQM GNLNFQHMNQ N

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGRAKAGLEL ISNKKSRRVT FEKRRKGLEK KAHELSTLCG VKVGLIIYGP KDTTSHGPTE  60
PNIWPENHQH IQTLINVYKQ ENLEDRRRRT TDLSMFYRDR TRKAEEELNK LHKKNVESKH  120
PTWDEHYDTL SSEELKQFGG LLETKLEAMK SRFDFMKGTQ NYFAESAAIG ADDSISNCMM  180
NSIDQNSSQL QSQDQNSYLV QSLFRRSSMQ LEIIQPQQAV VSGFTLPQYG GDIVPFHKSF  240
NALNANTMPN QKRMILMDEG GCSTSNLAAA AYNTEKSQVQ QGTYSNQAAA VMPEYVEGNQ  300
FENPVRYYFP AMQPMPFYVQ YPLHTTTEIQ KAQMEQYYQM GNLNFQHMNQ N

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2457	22	53