PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13466_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 271aa    MW: 29042.5 Da    PI: 5.8447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13466_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-1280126354
                                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                           ++h+e+ErrRR+riN  ++ Lr l+P++     +K++Ka+ L ++++ +k+L
  cra_locus_13466_iso_1_len_1750_ver_3  80 KSHSEAERRRRERINAHLAALRGLVPSN-----EKMDKATLLAEVINQVKEL 126
                                           58*************************9.....8************999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.81577126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1480134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-980126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-1381135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1283132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.673164250IPR002912ACT domain
SuperFamilySSF550212.14E-5166212No hitNo description
Gene3DG3DSA:3.30.70.2601.0E-6166210No hitNo description
CDDcd048731.64E-6166209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNLYCEDQSS LDIVQDYSGL IGQFSGNIGD CSGYLGSGSA AGVSQSLVLD SEKGELVKAS  60
GRVGKKGEGS SEAKSVAALK SHSEAERRRR ERINAHLAAL RGLVPSNEKM DKATLLAEVI  120
NQVKELKKTA RQVSDSVFVP LDSDEVKVEQ DNENAEDGTA GSFRASICCE YRPGLLSDLK  180
RALDSLQVNV VRSELSTLEG RMKNVFFFTA GERGEIGNAA DTGAYLVSSV HQALSAILDK  240
AAASAEYSPK TLIFPSKRRR VCYFDASSSS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERRRRE
2256260KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105500.15e-96transcription factor bHLH30-like
RefseqXP_027157135.16e-96transcription factor bHLH30-like
TrEMBLA0A068TLI31e-93A0A068TLI3_COFCA; Uncharacterized protein
STRINGSolyc02g076920.2.14e-86(Solanum lycopersicum)
STRINGPGSC0003DMT4000264493e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230