PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13388_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CO-like
Protein Properties Length: 517aa    MW: 57983.4 Da    PI: 6.2079
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13388_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.31.8e-091962340
                              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                          +r C+++ +k+++++C +++ +lC++C  + H+       H++v
  cra_locus_13388_iso_3_len_1901_ver_3 19 ARACDNCIKKRARWYCPSDDAFLCQSCDASVHSAnplarrHERV 62
                                          578*****************************657888888876 PP
2CCT68.12.3e-23462505144
                                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                           Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  cra_locus_13388_iso_3_len_1901_ver_3 462 REARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 505
                                           9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9781764IPR000315B-box-type zinc finger
SMARTSM003364.1E-111764IPR000315B-box-type zinc finger
PfamPF006431.2E-71962IPR000315B-box-type zinc finger
CDDcd000216.50E-92064No hitNo description
PROSITE profilePS5101716.152462504IPR010402CCT domain
PfamPF062037.6E-18462504IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MVSSDNNKKL ANAVGGKTAR ACDNCIKKRA RWYCPSDDAF LCQSCDASVH SANPLARRHE  60
RVRLKTSSSI KTASSSSSSS KNSLLDDQIS SSFPSWHHGF TKKARTPRQG SKNSKLLAAI  120
TRRNPLHHLV PEICSDENSQ EENDEQLILY RVPICDENSN EAAGFVEHCA RDIHHATNRI  180
SICDPFARNS NETGHYGRGI QHATNAFPIC DENSNEATIV AGHCACDIYH ATNDGLGAES  240
KSINDSNQLH GSLPTELELA EFAADVESLL GKGLDDEYRF DMEGLGLSEE KEFKKQSFFG  300
YGKVVKVKEE MGINNSSNNN NNNDDDEVIL DGGEIDLERE TFELNFDYDA SPMQCELEEI  360
KAENDHFHKE IMLCSEDCKV DNNYDSHVNN SSGTNKKKIL LRLDYEGVIA AWDDQKSPWT  420
TGDRPELDSG DCWPDCLGIC GSVHPYGEGI MLGHASIMDG GREARVLRYR EKRRTRLFSK  480
KIRYEVRKLN AEKRPRMKGR FVKRTNFSAN VFPLQNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1472488RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027098578.11e-161zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A068TXH21e-155A0A068TXH2_COFCA; Uncharacterized protein
STRINGXP_009627333.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470