PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

cra_locus_13295_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 185aa MW: 21056.3 Da PI: 10.3811

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13295_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.7	6.8e-07	35	117	5	88
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek 72 e+A + G+ v++++skk + + C + g ++++k+ + ++r++ + t+C +l+ kke cra_locus_13295_iso_5_len_931_ver_3 35 EFAISQGYVVTIKQSKKD------KVVVLGCDRGGVYRNRRKTvdetsgELARKRKSGSRLTNCPFELVGKKE- 101 578888888888887776......456799***99999999888886666777888889***99998. PP FAR1 73 dgkwevtkleleHnHe 88 dg w++t + HnHe cra_locus_13295_iso_5_len_931_ver_3 102 DGLWVLTVKNGSHNHE 117 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-5	35	118	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0004491	Molecular Function	methylmalonate-semialdehyde dehydrogenase (acylating) activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MVVTNFMEFT DTLQMLPPPP GSFIDREELI QHVGEFAISQ GYVVTIKQSK KDKVVVLGCD 60 RGGVYRNRRK TVDETSGELA RKRKSGSRLT NCPFELVGKK EDGLWVLTVK NGSHNHEALK 120 DLSEHPSARR FTEKEVLLIK EMTEAGLKPR QILKRLRQSN PELLSTPKHV YNIKAKLRQG 180 NMTGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	83	RRKTVDETSGELARKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112775.1	1e-119	methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like isoform X1
TrEMBL	A0A068TM10	1e-117	A0A068TM10_COFCA; Uncharacterized protein
STRING	Migut.B00534.1.p	1e-107	(Erythranthe guttata)