PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13182_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | B3 | ||||||||
Protein Properties | Length: 710aa MW: 76362.6 Da PI: 5.6482 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.8 | 9.5e-19 | 4 | 101 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFv 69 f+k l+ sd+++ grlvlpkk+ae++ ++++e++ l+++d +g++W++++++ +++s++yvl+ G cra_locus_13182_iso_1_len_2556_ver_3 4 FQKMLSASDAGRIGRLVLPKKCAEAYfpPISNPEGIPLKIKDIKGKEWTFQFRFwpNNNSRMYVLE-GITPCI 75 89**************************556668889***************9989999999***9.****** PP HHHT--TT-EEEEEE-SSSEE..EEEE CS B3 70 kangLkegDfvvFkldgrsefelvvkv 96 ++ +L++gD v+F++ + e++lv+++ cra_locus_13182_iso_1_len_2556_ver_3 76 QSMQLQAGDYVTFSRLE-PEGKLVMGF 101 **************665.566566554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.24E-20 | 2 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.59E-23 | 2 | 103 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-29 | 2 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.462 | 4 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-16 | 4 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-21 | 4 | 105 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.065 | 267 | 317 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 2.8E-12 | 272 | 314 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
XPLFQKMLSA SDAGRIGRLV LPKKCAEAYF PPISNPEGIP LKIKDIKGKE WTFQFRFWPN 60 NNSRMYVLEG ITPCIQSMQL QAGDYVTFSR LEPEGKLVMG FKKASTIPSD QGNETCMPRR 120 ELSSNGDVAG ESQKAGESSK PSEVVSTNGQ TKSAAASCSF PPKLTGESQS TPSKTDGPGN 180 LPKEGCEAIS PGRTKRRNGT LGLKGKRVRI ENEDNVDLEV SWEQVQGLLR PPPDKEPTVY 240 EIDGFEIEEY EEPPVIGRPT IPVVDELGQN MQWVQCEDCF KWRKLPSDAR LPARWTCSMN 300 SWDSERSLCS AVEELSAEEL EALLPTMNKD DSKKTKAPPK QDSDAVEALE GLDALAHLAV 360 QEKAGRSLPA SSQSTTKHPR HRVGCSCIVC IQPPSGKGPK HKQPCECVVC KSVKRRYRTL 420 MMKREKKQSE KESEASQELQ PQQLPEQVLN VDGGNKSPTE ETPSDGGIDD NNADEKCSAA 480 TSKSQIDLNI QPVKEDEQPP RFDTGSLAQL IINARERQHM QQRLSALGIG GDVGNQAHQD 540 GVGRLDAGNS VACLGHEAHR DGVGHPDAGN AVALVGNNQA HQDGVVRPDA GNSIALVGNN 600 NQAHQDGVVR PDAGNSVALV GNQAHHDGVG HLDAGNSVGL VGNQAHEDGF GRPDAGTSAA 660 LVGNQAHPDA GNNCVDVDNG SKKTDDVHKS PSKEVVSSSS SQPADGPSTH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 8e-57 | 2 | 112 | 22 | 132 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027111695.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X2 | ||||
Refseq | XP_027159886.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q0D5G4 | 1e-165 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A068TUI9 | 0.0 | A0A068TUI9_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_001573m | 0.0 | (Manihot esculenta) | ||||
STRING | XP_009616960.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7128 | 21 | 26 |