PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13048_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 378aa    MW: 43246.7 Da    PI: 9.431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13048_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05133156123
                                           EEETTTTEEESSHHHHHHHHHH.T CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                           y C  Cg+ F +++ L++H +  H
  cra_locus_13048_iso_1_len_2262_ver_3 133 YICRVCGRKFYTNEKLMNHFKQiH 156
                                           89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10108.6E-115390IPR029060PIN domain-like
Gene3DG3DSA:3.30.160.606.0E-4132157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.01E-5132158No hitNo description
PROSITE profilePS5015712.404133161IPR007087Zinc finger, C2H2
SMARTSM003550.0098133156IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135156IPR007087Zinc finger, C2H2
CDDcd061675.61E-17150285No hitNo description
PfamPF019361.1E-11205285IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10108.6E-11218286IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MKIIQIHHLF TAVESNGNLQ KLTPAILLYR CCHFGSSSAF SDKSASLTRR VAQKNVGVFW  60
DLDNKPPKSL PPYDAATRLK KAMMEFGFVK YMIAYANHHA FSYVPPEVLA QRKERKALSQ  120
LEKKGVLKPN VPYICRVCGR KFYTNEKLMN HFKQIHESEQ KKRLNQIESA RGKRRATLIG  180
KYSMKMEKYK NAARDVLTPK VGYGLADELK RAGFWVRTVS DKPQAADIEL RTRMVDMMDN  240
RQIDCVVLVS DDSDFVGVLK EAKMRCLRTV VVGDCNDGAL KRTADAAFSW QEIMMGKAKK  300
EAVSVVEHWK DRDVLKRLEW TYDPEMDRKL YYSDVESNSS DIEDFFSSEG DASVQKKGTG  360
AWWELEPSTE IVDASEIQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027180401.10.0uncharacterized protein LOC113779140
TrEMBLA0A2G9GCA30.0A0A2G9GCA3_9LAMI; Uncharacterized protein
STRINGXP_009770203.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920