PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_13006_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 379aa MW: 42877.7 Da PI: 4.7693

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_13006_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34	8.5e-11	18	118	11	128
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +ee + yL g++l+ +vi++++ y++ P++Lp + wy +++++k+ + g+W cra_locus_13006_iso_6_len_1396_ver_3 18 NEEAI-LYLDSFKPGSPLPR-NVIEDINPYQYRPSRLP------DGIWYIVHSTENKK---------NEFGFW 73 56666.79999999999999.89************9......34688887776653.........357* PP NAM 84 katgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 + + + e+++ ++ g ++tL f++ ++ + +t+Wvm+ey++ cra_locus_13006_iso_6_len_1396_ver_3 74 EVKEEAYEIFT-NSCISGWRTTLEFFELkDSLEQPRTNWVMEEYSI 118 *********.9999******752566778*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.173	8	141	IPR003441	NAC domain
SuperFamily	SSF101941	3.01E-18	20	141	IPR003441	NAC domain
Pfam	PF02365	4.5E-7	32	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MCPPALDSPE YMVLNDSNEE AILYLDSFKP GSPLPRNVIE DINPYQYRPS RLPDGIWYIV 60 HSTENKKNEF GFWEVKEEAY EIFTNSCISG WRTTLEFFEL KDSLEQPRTN WVMEEYSIIQ 120 KGESATNKEK ELRKLCRVFL RSSNKEMLPD SRGTASDGRD ESHMMPSIAP SVDNVPRKGS 180 PSESLMKDAD EGTTFLSVAD KLLNPWGDLS EQYVLNGDYL ELDDLVDPQS HSTSSENSGR 240 SSMTFDEYFD PIALLQELEN NNNQDQQGKD SSSRFSVVES SKSFEVVMQP ATSGSLVYSA 300 ERQEPTGCQP GSSVIETKVL DERTANHTVK RLKAEQSDQG PRRSHTKAAS SSTNAATQNG 360 KKKVMKNKRI KKYFCFMPF

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MCPPALDSPE YMVLNDSNEE AILYLDSFKP GSPLPRNVIE DINPYQYRPS RLPDGIWYIV  60
HSTENKKNEF GFWEVKEEAY EIFTNSCISG WRTTLEFFEL KDSLEQPRTN WVMEEYSIIQ  120
KGESATNKEK ELRKLCRVFL RSSNKEMLPD SRGTASDGRD ESHMMPSIAP SVDNVPRKGS  180
PSESLMKDAD EGTTFLSVAD KLLNPWGDLS EQYVLNGDYL ELDDLVDPQS HSTSSENSGR  240
SSMTFDEYFD PIALLQELEN NNNQDQQGKD SSSRFSVVES SKSFEVVMQP ATSGSLVYSA  300
ERQEPTGCQP GSSVIETKVL DERTANHTVK RLKAEQSDQG PRRSHTKAAS SSTNAATQNG  360
KKKVMKNKRI KKYFCFMPF