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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13006_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 379aa MW: 42877.7 Da PI: 4.7693 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34 | 8.5e-11 | 18 | 118 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +ee + yL g++l+ +vi++++ y++ P++Lp + wy +++++k+ + g+W cra_locus_13006_iso_6_len_1396_ver_3 18 NEEAI-LYLDSFKPGSPLPR-NVIEDINPYQYRPSRLP------DGIWYIVHSTENKK---------NEFGFW 73 56666.79999999999999.89**************9......34688887776653.........357*** PP NAM 84 katgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 + + + e+++ ++ g ++tL f++ ++ + +t+Wvm+ey++ cra_locus_13006_iso_6_len_1396_ver_3 74 EVKEEAYEIFT-NSCISGWRTTLEFFELkDSLEQPRTNWVMEEYSI 118 ***********.9999**********752566778*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.173 | 8 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-18 | 20 | 141 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-7 | 32 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MCPPALDSPE YMVLNDSNEE AILYLDSFKP GSPLPRNVIE DINPYQYRPS RLPDGIWYIV 60 HSTENKKNEF GFWEVKEEAY EIFTNSCISG WRTTLEFFEL KDSLEQPRTN WVMEEYSIIQ 120 KGESATNKEK ELRKLCRVFL RSSNKEMLPD SRGTASDGRD ESHMMPSIAP SVDNVPRKGS 180 PSESLMKDAD EGTTFLSVAD KLLNPWGDLS EQYVLNGDYL ELDDLVDPQS HSTSSENSGR 240 SSMTFDEYFD PIALLQELEN NNNQDQQGKD SSSRFSVVES SKSFEVVMQP ATSGSLVYSA 300 ERQEPTGCQP GSSVIETKVL DERTANHTVK RLKAEQSDQG PRRSHTKAAS SSTNAATQNG 360 KKKVMKNKRI KKYFCFMPF |