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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13006_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 27159.7 Da PI: 6.2566 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.2 | 3.6e-11 | 18 | 118 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +ee + yL g++l+ +vi++++ y++ P++Lp + wy +++++k+ + g+W+ cra_locus_13006_iso_4_len_834_ver_3 18 NEEAI-LYLDSFKPGSPLPR-NVIEDINPYQYRPSRLP------DGIWYIVHSTENKK---------NEFGFWE 74 56666.79999999999999.89**************9......34688887776653.........357**** PP NAM 85 atgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 + + e+++ ++ g ++tL f++ ++ + +t+Wvm+ey++ cra_locus_13006_iso_4_len_834_ver_3 75 VKEEAYEIFT-NSCISGWRTTLEFFELkDSLEQPRTNWVMEEYSI 118 **********.9999**********752566778*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.292 | 8 | 143 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.23E-16 | 20 | 129 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-7 | 32 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MCPPALDSPE YMVLNDSNEE AILYLDSFKP GSPLPRNVIE DINPYQYRPS RLPDGIWYIV 60 HSTENKKNEF GFWEVKEEAY EIFTNSCISG WRTTLEFFEL KDSLEQPRTN WVMEEYSIIQ 120 KGESATNKEK VKHRLISCKN HFVIYEXYEQ RKANSHTTNX LVIXWDHVQE LRKLCRVFLR 180 SSNKEMLPDS RGTASDGRDE SHMMPSIAPS VDNVPRKGSP SESLVKVSKF RQX |