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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_13006_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 453aa MW: 51063.5 Da PI: 5.0702 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.5 | 1.2e-10 | 18 | 118 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +ee + yL g++l+ +vi++++ y++ P++Lp + wy +++++k+ + g+W cra_locus_13006_iso_2_len_1619_ver_3 18 NEEAI-LYLDSFKPGSPLPR-NVIEDINPYQYRPSRLP------DGIWYIVHSTENKK---------NEFGFW 73 56666.79999999999999.89**************9......34688887776653.........357*** PP NAM 84 katgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 + + + e+++ ++ g ++tL f++ ++ + +t+Wvm+ey++ cra_locus_13006_iso_2_len_1619_ver_3 74 EVKEEAYEIFT-NSCISGWRTTLEFFELkDSLEQPRTNWVMEEYSI 118 ***********.9999**********752566778*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.173 | 8 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-18 | 20 | 141 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-7 | 32 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MCPPALDSPE YMVLNDSNEE AILYLDSFKP GSPLPRNVIE DINPYQYRPS RLPDGIWYIV 60 HSTENKKNEF GFWEVKEEAY EIFTNSCISG WRTTLEFFEL KDSLEQPRTN WVMEEYSIIQ 120 KGESATNKEK ELRKLCRVFL RSSNKEMLPD SRGTASDGRD ESHMMPSIAP SVDNVPRKGS 180 PSESLVGLLS SLHICRPWHV NVFFVPAEVL AVTSLLSESI KKSVANSHTL CSXPLEFXCL 240 IFRSKFPNFD NLATSLXSNM KDADEGTTFL SVADKLLNPW GDLSEQYVLN GDYLELDDLV 300 DPQSHSTSSE NSGRSSMTFD EYFDPIALLQ ELENNNNQDQ QGKDSSSRFS VVESSKSFEV 360 VMQPATSGSL VYSAERQEPT GCQPGSSVIE TKVLDERTAN HTVKRLKAEQ SDQGPRRSHT 420 KAASSSTNAA TQNGKKKVMK NKRIKKYFCF MPF |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11207 | 21 | 23 |