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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
cra_locus_12_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
RAV |
| Protein Properties |
Length: 362aa MW: 40167 Da PI: 9.3053 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_12_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 41.4 | 3.5e-13 | 63 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g
cra_locus_12_iso_1_len_1626_ver_3 63 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 111
689***9788.8*********3.....5**********99*************98 PP
|
| 2 | B3 | 97.7 | 7.6e-31 | 197 | 293 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72
f+k tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed sg++W+++++y+++s++ vltkGW++Fvk++
cra_locus_12_iso_1_len_1626_ver_3 197 FEKSVTPSDVGKLNRLVIPKQHAEKHfplqSGNTSKGVLLNFEDMSGKVWRFRYSYWNSSKAXVLTKGWSRFVKEK 272
89****************************88999***************************************** PP
T--TT-EEEEEE-SSSEE..E CS
B3 73 gLkegDfvvFkldgrsefelv 93
+Lk+gD+v F+++ +++l+
cra_locus_12_iso_1_len_1626_ver_3 273 NLKAGDIVSFQRSTGIDKQLY 293
***********7655444455 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009741 | Biological Process | response to brassinosteroid |
| GO:0009910 | Biological Process | negative regulation of flower development |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0048366 | Biological Process | leaf development |
| GO:0048527 | Biological Process | lateral root development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MDAGSCIDET TTSDTISTAP TSLSTLPVAK SPEISLCRVG SGASVILDSE GGVEAESRKL 60
PSSRFKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDIAAQRFR GRDAVTNFKP 120
LSEISEEDDI ESAFLKFSSK AEIVDMLRKH TYNDELEQSK RNFGLNGGNF NKGIKDGFSN 180
PNNSGLGKNT EAREQLFEKS VTPSDVGKLN RLVIPKQHAE KHFPLQSGNT SKGVLLNFED 240
MSGKVWRFRY SYWNSSKAXV LTKGWSRFVK EKNLKAGDIV SFQRSTGIDK QLYIDWKPRN 300
TAAAIAAPIQ PVQTVRLFGV NIVSNVVVVD NTNITCSTGK RVREIEFLAF DCSKKPRIID 360
AL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
| Publications
? help Back to Top |
- Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
Plant Sci., 2015. 241: p. 78-95
[PMID:26706061] - Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
PLoS Genet., 2016. 12(2): p. e1005833
[PMID:26829043] - Zhao Y, et al.
ABA receptor PYL9 promotes drought resistance and leaf senescence.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
[PMID:26831097]
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