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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1291_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 562aa MW: 62066 Da PI: 4.4319 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.3 | 4.4e-47 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgk 72 lppGfrFhPtd el+++yLk+k+ gkk+++ e+i+e++iyk+ PwdLp k ++k+++ +wyfF++r++ky++g+ cra_locus_1291_iso_2_len_2649_ver_3 6 LPPGFRFHPTDIELIMYYLKRKIMGKKFHF-EAISELNIYKFSPWDLPdKsCLKSKDLNWYFFCPRERKYSSGD 78 79***************************9.89**************96347788888**************** PP NAM 73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r +r t++gyWk+tgkd++++ k+++vg+ ktLvf++g pkg++tdWv+ eyr+ cra_locus_1291_iso_2_len_2649_ver_3 79 RMRRGTDTGYWKTTGKDRSIVY-KERVVGMVKTLVFHEGCPPKGKRTDWVVYEYRM 133 **********************.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-56 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.401 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-23 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MARACLPPGF RFHPTDIELI MYYLKRKIMG KKFHFEAISE LNIYKFSPWD LPDKSCLKSK 60 DLNWYFFCPR ERKYSSGDRM RRGTDTGYWK TTGKDRSIVY KERVVGMVKT LVFHEGCPPK 120 GKRTDWVVYE YRMDDKDLAD AGVSQDAYVL YKVFKKNGPG PRNGAQYGAP FNEEEWNDDD 180 SGIPVDIPSD GPSPTVLTLP RNPNSVASKS VIDPVCPSAS SLGEAGPSLV QPDPDDVILD 240 GLSNSIVMDM FGPQCTPGWA FAKNGPFPAG PSVNDVPYSP NDDIAHLLVE FTGEGTGCPN 300 EENYELDRLC HGRYNVVAPQ LNGNDPFNGL EDLSRAELNV AHFPGGPGYI DKMLPQDDME 360 FLELNDLDAP LKFLEDFVGS EKICTGSSYE VSNADDLSKA GLNGVNFSGG SGYLNNMLPQ 420 DDMAFLELND LDAPLNFPED FVGSEKIFTG SSYEVSHADA PEHLTGISST QFSYGAGSGE 480 ICYNNFPHSE TELPGLSEFP LLPNSSGGHL DSTIVYPMEN AYRSVLSQRF AAGYNLHSFS 540 YGQPEESRGA AENQERGRSH NF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-40 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-40 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-40 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-40 | 1 | 157 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-40 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-40 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-40 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-40 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-40 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-40 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-40 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-40 | 1 | 157 | 15 | 169 | NAC domain-containing protein 19 |
3ulx_A | 3e-40 | 6 | 133 | 15 | 140 | Stress-induced transcription factor NAC1 |
4dul_A | 2e-40 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-40 | 1 | 157 | 12 | 166 | NAC domain-containing protein 19 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | PGSC0003DMT400073779 | 1e-106 | (Solanum tuberosum) |