PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12832_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | B3 | ||||||||
Protein Properties | Length: 278aa MW: 32076.7 Da PI: 9.5723 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.8 | 6.4e-16 | 105 | 194 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+k +++s v+k +l+lp+ f+e h + e + t++lede+ +++ k+ +++ l++GW++F a+ L cra_locus_12832_iso_4_len_950_ver_3 105 FVKPMIRSIVTKGFWLSLPRLFCELHL-P-EHDATVILEDENQTEYNTKY--LAERRG--LSGGWRGFSIAHSL 172 89*********************8884.3.46679***************..555555..9************* PP -TT-EEEEEE-SSSEE..EEEEE- CS B3 75 kegDfvvFkldgrsefelvvkvfr 98 egD++vF++++ + ++v ++r cra_locus_12832_iso_4_len_950_ver_3 173 IEGDVLVFHMVRYCK--MKVYIIR 194 *********877444..4777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-21 | 99 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-17 | 99 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.24E-25 | 103 | 194 | No hit | No description |
Pfam | PF02362 | 9.9E-14 | 105 | 195 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.843 | 105 | 196 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-17 | 105 | 196 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MKRKNRFETT RNLLETPYGI QFRPQQRESG ICADGDQKQM FSPHLDVSKQ NPCHTSLMAV 60 PKKLRKSRRR MAMIQDLYGQ VEATSSIMKR AQTVQTYLDA RFPSFVKPMI RSIVTKGFWL 120 SLPRLFCELH LPEHDATVIL EDENQTEYNT KYLAERRGLS GGWRGFSIAH SLIEGDVLVF 180 HMVRYCKMKV YIIRSDHFAE VDAALCLLHL DAHRTGTSSG QLVSPXKTLG GEKLQRSLLQ 240 EVFAGKYEKY ITYGNNIRVN RPENIYEELQ LALEGREL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027112465.1 | 7e-91 | B3 domain-containing protein Os01g0234100-like isoform X2 | ||||
TrEMBL | A0A068TP84 | 2e-72 | A0A068TP84_COFCA; Uncharacterized protein | ||||
STRING | XP_009778967.1 | 2e-71 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13184 | 12 | 19 |