PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_12832_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 243aa MW: 28381.6 Da PI: 9.9608

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12832_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.2	2e-15	105	184	1	86
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k +++s v+k +l+lp+ f+e h + e + t++lede+ +++ k+ +++ l++GW++F a+ cra_locus_12832_iso_2_len_1301_ver_3 105 FVKPMIRSIVTKGFWLSLPRLFCELHL-P-EHDATVILEDENQTEYNTKY--LAERRG--LSGGWRGFSIAHS 171 89*******************8884.3.46679***********..555555..9******** PP --TT-EEEEEE-S CS B3 74 LkegDfvvFkldg 86 L egD++vF++++ cra_locus_12832_iso_2_len_1301_ver_3 172 LIEGDVLVFHMVR 184 *******9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.4E-16	99	191	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.26E-19	101	191	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.72E-22	103	191	No hit	No description
PROSITE profile	PS50863	10.63	105	196	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-15	105	196	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.9E-13	105	184	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MKRKNRFETT RNLLETPYGI QFRPQQRESG ICADGDQKQM FSPHLDVSKQ NPCHTSLMAV 60 PKKLRKSRRR MAMIQDLYGQ VEATSSIMKR AQTVQTYLDA RFPSFVKPMI RSIVTKGFWL 120 SLPRLFCELH LPEHDATVIL EDENQTEYNT KYLAERRGLS GGWRGFSIAH SLIEGDVLVF 180 HMVRYCKMKV EKSFKDLFCK KXFAGKYEKY ITYGNNIRVN RPENIYEELQ LALEGLISKT 240 YSI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112465.1	3e-71	B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBL	A0A1J6IMH7	4e-56	A0A1J6IMH7_NICAT; B3 domain-containing protein
STRING	XP_009778967.1	1e-56	(Nicotiana sylvestris)