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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12465_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 749aa MW: 82833.4 Da PI: 4.4882 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.7 | 4.9e-12 | 597 | 638 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rWT+++ el+++avkq+G++ + I + ++ gRt+ q+k+++ k cra_locus_12465_iso_5_len_2866_ver_3 597 RWTKQDTELFYEAVKQFGTD-LSMIQQLFP-GRTRRQVKLKYKK 638 8*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 5.8E-27 | 588 | 669 | No hit | No description |
PROSITE profile | PS51293 | 9.482 | 593 | 641 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-8 | 594 | 642 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 597 | 638 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.76E-11 | 597 | 644 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.00E-8 | 597 | 638 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MDSAPFDDIF SDNAVKNARA GSKFQPRAKP RPPKKNSTTP STALSLQFQT TDSSVNTFTE 60 SCGVKDPSGL DGQGSSGIVN APSVDAGTTE NVNSTVGLDP GVSIFIPDSN EDWGSCFEKS 120 VGENGDIFIG LESFGDFLPD SSAVIDNSVP SSEAPAVDVP GSSNTEEGRI DPTVPAVDDS 180 ACFSDVPGIS SQPETSAAED PLTGPETIIS ASHGDDRDLD KEDLESYPCL ETLDISELAN 240 RSGRRIGKFQ PKPKSQLERH QTNISDLDLV HPVPTVSRQQ DSQLVPPEVN FVDHGLVTAS 300 TQNDILEFSS VGLSGPAAEI ASEAEESNPI EPSHAGAGIP GEHLESVPGK LTSRRAKTGK 360 SRKTVSDHLS PEHPTSNQTE TAGRVLRKRQ NNNNVYQLRD ESEDEVVADG DLPSSSPSVF 420 AAKGNKNDDQ EYQPENESLT KKVKKSKKTP GDKEKPVRKQ KKDNETSDQT AKAAPKKFLH 480 STRRRRVNKT LLETPEDEID FQKVPLRDLI LLAEHKERMA KKEATPSRAP PSNHSAGDFV 540 EPDNEDRGGD DFQQYYDEPF ASEQGGEAND KESSPRVQEN SEYFNYQTYM DKTPIARWTK 600 QDTELFYEAV KQFGTDLSMI QQLFPGRTRR QVKLKYKKEE RQHPLRLRDA LTNRARDHSH 660 FELVIDRLRQ LAAEEKQNSD KAESVDLTAE EEAEEEAPET SDKEGKSEQM DEEMMEKTEP 720 DYNKQVQSPV KTYDSEDDLL LWNQYKSEE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087506.1 | 0.0 | uncharacterized protein LOC113708958 isoform X1 | ||||
Refseq | XP_027087507.1 | 0.0 | uncharacterized protein LOC113708958 isoform X1 | ||||
TrEMBL | A0A068VEV1 | 0.0 | A0A068VEV1_COFCA; Uncharacterized protein |