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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12235_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 39523.7 Da PI: 7.238 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.9 | 1.5e-17 | 27 | 75 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50 + pGfrF+Ptdeel+++yLkkk+eg++ + evi+e+di+++ePwdLp k cra_locus_12235_iso_4_len_1579_ver_3 27 MFPGFRFSPTDEELICYYLKKKLEGSDKCV-EVIPEIDICRHEPWDLPGK 75 579************************777.99**************932 PP | |||||||
2 | NAM | 39.9 | 1.3e-12 | 74 | 114 | 87 | 128 |
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gk+ +v+s +++++g+k+tLvf++grapkg++t+W+mhey + cra_locus_12235_iso_4_len_1579_ver_3 74 GKNXNVKS-GSAVIGTKRTLVFHTGRAPKGQRTEWIMHEYCM 114 56778888.9999***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.734 | 1 | 130 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-34 | 21 | 129 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-14 | 29 | 113 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEQEEKKEVF VLSRKNMEIS IAEASSMFPG FRFSPTDEEL ICYYLKKKLE GSDKCVEVIP 60 EIDICRHEPW DLPGKNXNVK SGSAVIGTKR TLVFHTGRAP KGQRTEWIMH EYCMSGKAQD 120 LMVVCRLRKN IEFNLDENPR KGSAGQRHSS TLANDVAALS VVEQNGGKAG TLVADSCSKE 180 GSSSYNSHSV EQNDSWFDSV DKTTNEISPH GSSSCRQFQG SDRNEEDWFA DIMNDDIIKL 240 DESSLTANPH LLPTAPGEPQ PKITSTEPSR VIAPAALPFQ GTANRRLRLR RPKIELKNAT 300 PLTAYESGVV TLTRELVHSQ DSQKSQKNLG MAIKHRVVLV LFVIILVLLL YMKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027083181.1 | 1e-120 | NAC domain-containing protein 60-like | ||||
Refseq | XP_027182754.1 | 1e-120 | NAC domain-containing protein 60-like | ||||
TrEMBL | A0A068UGV5 | 1e-118 | A0A068UGV5_COFCA; Uncharacterized protein | ||||
STRING | XP_009758643.1 | 1e-102 | (Nicotiana sylvestris) |