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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12235_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 38839.9 Da PI: 7.1535 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 111.9 | 7.2e-35 | 27 | 121 | 1 | 95 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgk 72 + pGfrF+Ptdeel+++yLkkk+eg++ + evi+e+di+++ePwdLp k++ ++++ew+fFs+r +ky++g+ cra_locus_12235_iso_3_len_1557_ver_3 27 MFPGFRFSPTDEELICYYLKKKLEGSDKCV-EVIPEIDICRHEPWDLPaKSIIQSDNEWFFFSPRGRKYPNGS 98 579************************777.99***************767778899**************** PP NAM 73 rknratksgyWkatgkdkevlsk 95 +++rat+ gyWkatgk+++v+ k cra_locus_12235_iso_3_len_1557_ver_3 99 QSKRATACGYWKATGKERNVKWK 121 *******************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.55E-37 | 21 | 122 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.957 | 27 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-16 | 29 | 119 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEQEEKKEVF VLSRKNMEIS IAEASSMFPG FRFSPTDEEL ICYYLKKKLE GSDKCVEVIP 60 EIDICRHEPW DLPAKSIIQS DNEWFFFSPR GRKYPNGSQS KRATACGYWK ATGKERNVKW 120 KNIEFNLDEN PRKGSAGQRH SSTLANDVAA LSVVEQNGGK AGTLVADSCS KEGSSSYNSH 180 SVEQNDSWFD SVDKTTNEIS PHGSSSCRQF QGSDRNEEDW FADIMNDDII KLDESSLTAN 240 PHLLPTAPGE PQPKITSTEP SRVIAPAALP FQGTANRRLR LRRPKIELKN ATPLTAYESG 300 VVTLTRELVH SQDSQKSQKN LGMAIKHRVV LVLFVIILVL LLYMKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-27 | 26 | 118 | 16 | 107 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-27 | 26 | 118 | 16 | 107 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-27 | 26 | 118 | 16 | 107 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-27 | 26 | 118 | 16 | 107 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-27 | 26 | 118 | 19 | 110 | NAC domain-containing protein 19 |
3swm_B | 4e-27 | 26 | 118 | 19 | 110 | NAC domain-containing protein 19 |
3swm_C | 4e-27 | 26 | 118 | 19 | 110 | NAC domain-containing protein 19 |
3swm_D | 4e-27 | 26 | 118 | 19 | 110 | NAC domain-containing protein 19 |
3swp_A | 4e-27 | 26 | 118 | 19 | 110 | NAC domain-containing protein 19 |
3swp_B | 4e-27 | 26 | 118 | 19 | 110 | NAC domain-containing protein 19 |
3swp_C | 4e-27 | 26 | 118 | 19 | 110 | NAC domain-containing protein 19 |
3swp_D | 4e-27 | 26 | 118 | 19 | 110 | NAC domain-containing protein 19 |
4dul_A | 3e-27 | 26 | 118 | 16 | 107 | NAC domain-containing protein 19 |
4dul_B | 3e-27 | 26 | 118 | 16 | 107 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027083181.1 | 1e-110 | NAC domain-containing protein 60-like | ||||
Refseq | XP_027182754.1 | 1e-110 | NAC domain-containing protein 60-like | ||||
TrEMBL | A0A068UGV5 | 1e-107 | A0A068UGV5_COFCA; Uncharacterized protein | ||||
STRING | XP_009758643.1 | 8e-99 | (Nicotiana sylvestris) |