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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12235_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 427aa MW: 48061.1 Da PI: 7.2153 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.5 | 1.9e-17 | 27 | 75 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50 + pGfrF+Ptdeel+++yLkkk+eg++ + evi+e+di+++ePwdLp k cra_locus_12235_iso_1_len_1797_ver_3 27 MFPGFRFSPTDEELICYYLKKKLEGSDKCV-EVIPEIDICRHEPWDLPGK 75 579************************777.99**************932 PP | |||||||
2 | NAM | 39.5 | 1.7e-12 | 74 | 114 | 87 | 128 |
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gk+ +v+s +++++g+k+tLvf++grapkg++t+W+mhey + cra_locus_12235_iso_1_len_1797_ver_3 74 GKNXNVKS-GSAVIGTKRTLVFHTGRAPKGQRTEWIMHEYCM 114 56778888.9999***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.734 | 1 | 130 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-34 | 21 | 129 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-14 | 29 | 113 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MEQEEKKEVF VLSRKNMEIS IAEASSMFPG FRFSPTDEEL ICYYLKKKLE GSDKCVEVIP 60 EIDICRHEPW DLPGKNXNVK SGSAVIGTKR TLVFHTGRAP KGQRTEWIMH EYCMSGKAQD 120 LMVVCRLRKN IEFNLDENPR KGSAGQRHSS TLANDVAALS VVEQNGGKAG TLVADSCSKE 180 GSSSYNSHSV EQNDSWFDSV DKTTNEISPH GSSSCRQFQV LSFSLQLSCL LLIACLMHFQ 240 EEKPCMVXIL DNNRKRFFPS PVILINRECE IYTRAPXLVY PCQGFXSIFE MQGSDRNEED 300 WFADIMNDDI IKLDESSLTA NPHLLPTAPG EPQPKITSTE PSRVIAPAAL PFQGTANRRL 360 RLRRPKIELK NATPLTAYES GVVTLTRELV HSQDSQKSQK NLGMAIKHRV VLVLFVIILV 420 LLLYMKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027083181.1 | 4e-84 | NAC domain-containing protein 60-like | ||||
Refseq | XP_027182754.1 | 4e-84 | NAC domain-containing protein 60-like | ||||
TrEMBL | A0A068UGV5 | 3e-82 | A0A068UGV5_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400015077 | 2e-72 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4154 | 22 | 43 |