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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1213_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 298aa MW: 32458.2 Da PI: 8.438 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5.2e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +++++G g W+tI + R+ ++k++w++ cra_locus_1213_iso_3_len_1592_ver_3 5 KQKWTAEEEAALKAGIARYGVGKWSTILKDPEfsgvlRSRSNVDLKDKWRN 55 79************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.552 | 1 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.72E-16 | 2 | 91 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.36E-21 | 6 | 57 | No hit | No description |
SuperFamily | SSF46785 | 2.72E-14 | 117 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 2.1E-13 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 7.8E-14 | 120 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 20.526 | 120 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 3.5E-9 | 125 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGI ARYGVGKWST ILKDPEFSGV LRSRSNVDLK DKWRNINVMV 60 NGLGSRQRGR PACKSIQLPP KPDENTMALE TVVENDSDVL NVKPLAAAAE RLPNATSKKP 120 ISRLDDLIME AIAKLKEPRG SSRAIIASYI EERYCVPPNF ERILATNLKL LTENQQLLKV 180 KHQYRIVTSP TSLRVRNKPA PSLLDGVEKD SSSVERNGIK IITKAQVDAE LEMMKSMSAE 240 EAAAIAAQAI AQAEAAIAEA EAAAKEAEKA EAEAEASQCF ADATAAALME GFYRSVRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075217.1 | 1e-107 | single myb histone 6-like isoform X1 | ||||
Refseq | XP_027079170.1 | 1e-107 | single myb histone 6-like isoform X1 | ||||
Refseq | XP_027079171.1 | 1e-107 | single myb histone 6-like isoform X1 | ||||
Refseq | XP_027179811.1 | 1e-107 | single myb histone 6 isoform X1 | ||||
Swissprot | C0HIA3 | 7e-72 | SMH6_MAIZE; Single myb histone 6 | ||||
TrEMBL | A0A068U243 | 1e-106 | A0A068U243_COFCA; Uncharacterized protein | ||||
STRING | XP_009786348.1 | 1e-104 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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