PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1213_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 298aa MW: 32458.2 Da PI: 8.438

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1213_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.4	5.2e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +++++G g W+tI + R+ ++k++w++ cra_locus_1213_iso_2_len_1764_ver_3 5 KQKWTAEEEAALKAGIARYGVGKWSTILKDPEfsgvlRSRSNVDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.552	1	63	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-16	2	91	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-8	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-7	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	7.36E-21	6	57	No hit	No description
SuperFamily	SSF46785	2.72E-14	117	189	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	2.1E-13	118	183	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	7.8E-14	120	189	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	20.526	120	188	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	3.5E-9	125	181	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGI ARYGVGKWST ILKDPEFSGV LRSRSNVDLK DKWRNINVMV 60 NGLGSRQRGR PACKSIQLPP KPDENTMALE TVVENDSDVL NVKPLAAAAE RLPNATSKKP 120 ISRLDDLIME AIAKLKEPRG SSRAIIASYI EERYCVPPNF ERILATNLKL LTENQQLLKV 180 KHQYRIVTSP TSLRVRNKPA PSLLDGVEKD SSSVERNGIK IITKAQVDAE LEMMKSMSAE 240 EAAAIAAQAI AQAEAAIAEA EAAAKEAEKA EAEAEASQCF ADATAAALME GFYRSVRV

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075217.1	1e-107	single myb histone 6-like isoform X1
Refseq	XP_027079170.1	1e-107	single myb histone 6-like isoform X1
Refseq	XP_027079171.1	1e-107	single myb histone 6-like isoform X1
Refseq	XP_027179811.1	1e-107	single myb histone 6 isoform X1
Swissprot	C0HIA3	7e-72	SMH6_MAIZE; Single myb histone 6
TrEMBL	A0A068U243	1e-106	A0A068U243_COFCA; Uncharacterized protein
STRING	XP_009786348.1	1e-104	(Nicotiana sylvestris)

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069]