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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12127_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 304aa MW: 34688.1 Da PI: 5.2194 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.2 | 1.4e-15 | 26 | 117 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikege 68 +W+++ + +L++a ++ +l+rg+l++++W+ev++ + + ++ +r+ +qCk++++ l+k+yk +k+ cra_locus_12127_iso_3_len_1489_ver_3 26 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQEVADGVnarhgHTKKTRRTDVQCKNRIDTLKKKYKIEKAKI 98 7*************************************99888888999*********************999 PP trihelix 69 kkrtsessstcpyfdqlea 87 + + + +s++p++++l+a cra_locus_12127_iso_3_len_1489_ver_3 99 AESNGNLTSSWPFYTRLDA 117 999888889*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.5E-26 | 24 | 118 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGEIHESSAT QSQTPPTRPL PFREDCWSEE ATSTLVDAWG RRYLELNRGN LRQKDWQEVA 60 DGVNARHGHT KKTRRTDVQC KNRIDTLKKK YKIEKAKIAE SNGNLTSSWP FYTRLDALIG 120 PNVKNQSQKL MPLMNSSAQS QLSMPLPPMG IPLYKKPQLL LPPAVPLEPV VLPQKRQFSS 180 VGDSYFRKNY SAMAAAAAAA EEDVEEDEDG EAGSDEEEED DVEEKDGTAE EEGMRRLAKA 240 IERFGGIYER VENMKQRQMV ELEKQRMQFT KDLEVQRMQL FMDTQVQLEK LKQAKRSGSD 300 DIYS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105528.1 | 1e-138 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A068TLE8 | 1e-126 | A0A068TLE8_COFCA; Uncharacterized protein | ||||
STRING | XP_009757835.1 | 1e-122 | (Nicotiana sylvestris) |