PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_12077_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 438aa MW: 48171.4 Da PI: 9.633

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_12077_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.7e-06	292	317	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri ++ +L+el+P+ + cra_locus_12077_iso_2_len_1779_ver_3 292 SIAERERRTRISGKLKKLQELVPNmD 317 689********************844 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.09E-5	289	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.66E-4	290	322	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-4	291	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MASGGGGTIN SPALMRYGSA PSSLLSTAVD SVIGSTREFS ALGSTHHHRQ PQNLNMGPNP 60 TPAVRFFPIE TSSFAAESNC KVPNNTSTDP HKKGPDINNN NNNSTIGLQR SYGLKQDAAI 120 SGGGVGMVSF TPLVRHSSSP AGFLNQLAHA STSNDDNGFS ITRGHAITRL NSQLSFTRQE 180 PLSQISEENE NGLSRETEAK KSSTHSYATT SYGVGPWEDA NSLMFSVGPS KRAKNINSEI 240 INDLNSMETQ FQFSMPQTVI EMSTMDKLLN IPQDSVPCKI RAKRGFATHP RSIAERERRT 300 RISGKLKKLQ ELVPNMDKVL IISFLLPPFS STIFLLITLE ISCVNKCCCV VDKHTCSKLA 360 MLTCWIWQFN ISKASRIMFR SSTRNXRTVH VDAESQETVV VKERVDVKDR YTCAVFFIQT 420 FSLLTPRKLR AINSEPPS

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MASGGGGTIN SPALMRYGSA PSSLLSTAVD SVIGSTREFS ALGSTHHHRQ PQNLNMGPNP  60
TPAVRFFPIE TSSFAAESNC KVPNNTSTDP HKKGPDINNN NNNSTIGLQR SYGLKQDAAI  120
SGGGVGMVSF TPLVRHSSSP AGFLNQLAHA STSNDDNGFS ITRGHAITRL NSQLSFTRQE  180
PLSQISEENE NGLSRETEAK KSSTHSYATT SYGVGPWEDA NSLMFSVGPS KRAKNINSEI  240
INDLNSMETQ FQFSMPQTVI EMSTMDKLLN IPQDSVPCKI RAKRGFATHP RSIAERERRT  300
RISGKLKKLQ ELVPNMDKVL IISFLLPPFS STIFLLITLE ISCVNKCCCV VDKHTCSKLA  360
MLTCWIWQFN ISKASRIMFR SSTRNXRTVH VDAESQETVV VKERVDVKDR YTCAVFFIQT  420
FSLLTPRKLR AINSEPPS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027119319.1	1e-113	transcription factor bHLH128-like isoform X1
Refseq	XP_027119327.1	1e-113	transcription factor bHLH128-like isoform X1
TrEMBL	A0A068UP76	1e-111	A0A068UP76_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400016793	4e-90	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6455	23	28