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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12026_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 36843.9 Da PI: 6.9267 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.1 | 3.6e-49 | 7 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........................ 49 lppGfrFhPtdeelv +yL++k++++++ + +i+e+d+yk++PwdLp cra_locus_12026_iso_5_len_4670_ver_3 7 LPPGFRFHPTDEELVIHYLCRKCASQPIAV-PIIAEIDLYKYNPWDLPGnflsfyyeiifixlnewlkfarnd 78 79**************************99.88***************5589***************999999 PP NAM 50 .......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115 ++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + + +g+kk Lvfy g+apk cra_locus_12026_iso_5_len_4670_ver_3 79 elmiilgMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGN--PKPMGIKKALVFYAGKAPK 149 88877763334899************************************98..789**************** PP NAM 116 gektdWvmheyrl 128 gekt+W+mheyrl cra_locus_12026_iso_5_len_4670_ver_3 150 GEKTNWIMHEYRL 162 ***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-20 | 3 | 56 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.92 | 7 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-27 | 8 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-37 | 83 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MAAELQLPPG FRFHPTDEEL VIHYLCRKCA SQPIAVPIIA EIDLYKYNPW DLPGNFLSFY 60 YEIIFIXLNE WLKFARNDEL MIILGMALYG EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK 120 ATGADKPIGN PKPMGIKKAL VFYAGKAPKG EKTNWIMHEY RLADVDRSAR KRNNSLRLDD 180 WVLCRIYNKK GTIDKQQMMG IRKAASQVIE EEDKKPEILK SVPETTPVVY SDFMYLDPSD 240 SVPKLHTNSS SSEQVVSPEF SQNTCEVQSE PKLNDWEKST SALDFPFSYD GNVLMNTQFP 300 SNYQMSPLQD MFMFLQKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-74 | 3 | 195 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027148352.1 | 1e-165 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-133 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A068UR72 | 1e-164 | A0A068UR72_COFCA; Uncharacterized protein | ||||
STRING | XP_009759475.1 | 1e-153 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |