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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12014_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 450aa MW: 50927.1 Da PI: 8.868 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 333.6 | 5.3e-102 | 139 | 450 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye.........paaslken..lglqlmssiaerdakirernlalsekkaavaerdma 59 mdd g+re r++ yy+ p+ ++ke+ +++++ +++aerda+i+er+ alsek++a+a+rd a cra_locus_12014_iso_3_len_1686_ver_3 139 MDDGGHREsrRQRMdYYKggqspwnmmPQYQMKEQifMNTKISALLAERDAAIEERDRALSEKREAIADRDLA 211 9*****999777778*********9997778887633788999999*************************** PP GAGA_bind 60 flqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeekl 132 +qrd+a+aer++al erdn+++al+++e +++ al g+++ +gtk i+++ + p+ +s++ +re +++ cra_locus_12014_iso_3_len_1686_ver_3 212 IQQRDTAIAERDNALRERDNAIAALQFQESTMSAAL--GSGSQRGTKRINHHSD-HYPRNMQSTQSMRELQII 281 ***************************999876665..778889******9888.556666777789****** PP GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslD 204 ea+pi+ +e +++ k r + kk ++k ++ kk +k ++ +++ + + skae++ +dl +n++++D cra_locus_12014_iso_3_len_1686_ver_3 282 EAFPITAISSEDAKSHLLK-RTKVKKGISTKGTRSSKKAKKVGEDLNRHVTTDGSKAEWEAQDLsCINEINFD 353 ****998777776666555.44445555555554444455555555555555669*********88******* PP GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277 est+P+PvC+CtG+ rqCYkWGnGGWqS+CCtt++SvyPLP+ +++r+aR++grKmS+++f +lL ++aa G+ cra_locus_12014_iso_3_len_1686_ver_3 354 ESTMPIPVCTCTGVARQCYKWGNGGWQSSCCTTSLSVYPLPQIPNKRHARMGGRKMSGSVFGRLLTRVAAAGH 426 ************************************************************************* PP GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301 dls p+DLk++WAkHGtn+++ti+ cra_locus_12014_iso_3_len_1686_ver_3 427 DLSIPLDLKNYWAKHGTNRYITIK 450 ***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 7.6E-93 | 139 | 450 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 5.4E-133 | 139 | 450 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
XKFLSFTCQP LSVSLRCRSG SLAHQAQTFL STFSVTVYHL PVLLFSTEGR FYMFILHDLV 60 LEDSGGEKLS AQFFEGSSLE DLELNLGAXE YNWSVEGTMK VXGFIWIGFS WKKVDPRSKD 120 LVAYITVFYL EEHLQCVYMD DGGHRESRRQ RMDYYKGGQS PWNMMPQYQM KEQIFMNTKI 180 SALLAERDAA IEERDRALSE KREAIADRDL AIQQRDTAIA ERDNALRERD NAIAALQFQE 240 STMSAALGSG SQRGTKRINH HSDHYPRNMQ STQSMRELQI IEAFPITAIS SEDAKSHLLK 300 RTKVKKGIST KGTRSSKKAK KVGEDLNRHV TTDGSKAEWE AQDLSCINEI NFDESTMPIP 360 VCTCTGVARQ CYKWGNGGWQ SSCCTTSLSV YPLPQIPNKR HARMGGRKMS GSVFGRLLTR 420 VAAAGHDLSI PLDLKNYWAK HGTNRYITIK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 297 | 305 | LLKRTKVKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027160005.1 | 1e-173 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_027160006.1 | 1e-173 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_027160008.1 | 1e-173 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_027160009.1 | 1e-173 | protein BASIC PENTACYSTEINE4-like | ||||
Refseq | XP_027160010.1 | 1e-173 | protein BASIC PENTACYSTEINE4-like | ||||
Swissprot | Q8S8C6 | 1e-115 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A068TKY0 | 1e-172 | A0A068TKY0_COFCA; Uncharacterized protein | ||||
STRING | XP_009804621.1 | 1e-158 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9287 | 21 | 28 |