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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_12006_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | SBP | ||||||||
Protein Properties | Length: 336aa MW: 36810.2 Da PI: 8.9128 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.8 | 2.4e-41 | 171 | 248 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rr cra_locus_12006_iso_2_len_1514_ver_3 171 RCQAEGCNADLTNAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRR 243 6************************************************************************ PP -S--- CS SBP 74 rkkqa 78 rk+q+ cra_locus_12006_iso_2_len_1514_ver_3 244 RKSQQ 248 **997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-35 | 167 | 233 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.47 | 169 | 246 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-38 | 170 | 250 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.6E-31 | 172 | 245 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MFTTGEETSQ EAVDQNRHLF DPYATQTFNE TTALLNPNAA HFSTAHNPHH LFHHDPQSSN 60 HAHLNSLYDP RSAAAAAAAY GTSSYGHPNP HHHHHHNQTS MLSLESAGPT GYMVVPKTEP 120 ALVGALDFTN SGRIGLNLGG RTYFSSSEDD FVSRLYRRSR VAEPGSLNSP RCQAEGCNAD 180 LTNAKHYHRR HKVCEFHSKA ATVIAAGLTQ RFCQQCSRFH LLSEFDNGKR SCRKRLADHN 240 RRRRKSQQQQ QVSSSQDLSC NNKSQNDVAP NSSPHNLSRS PPESSSGGAH SSSVTVAISP 300 PRISLDCFRQ RSYHHGAAAA ATNSSASTSS LFFSNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 165 | 245 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027112970.1 | 1e-142 | squamosa promoter-binding-like protein 8 | ||||
Refseq | XP_027163563.1 | 1e-142 | squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 1e-74 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A068UMK9 | 1e-140 | A0A068UMK9_COFCA; Uncharacterized protein | ||||
STRING | Migut.B01572.1.p | 1e-119 | (Erythranthe guttata) |
Publications ? help Back to Top | |||
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