PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_118457_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | B3 | ||||||||
Protein Properties | Length: 77aa MW: 8925.17 Da PI: 8.8399 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36 | 1.3e-11 | 20 | 71 | 42 | 91 |
TS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 42 sgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 + ++W k+ + + k+++ + ++GWkeFv +n +k+gD +vF+l++ + f+ cra_locus_118457_iso_1_len_281_ver_3 20 REETWIAKCVIykEPKRKARLRGDGWKEFVMDNSIKAGDACVFELVEINAFK 71 558999999663444444467779********************98756664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.391 | 1 | 77 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-9 | 19 | 71 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-11 | 19 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.38E-10 | 22 | 76 | No hit | No description |
SuperFamily | SSF101936 | 8.04E-11 | 22 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
XYLNFQSKKY CNISLGVEGR EETWIAKCVI YKEPKRKARL RGDGWKEFVM DNSIKAGDAC 60 VFELVEINAF KIIIYPA |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |