PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_11812_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 276aa MW: 31160.2 Da PI: 8.6984

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11812_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	8.5e-14	82	134	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r h +Er+RR+++ + ++ Lr+llP ++K s a+ ++Av+YIk+Lq cra_locus_11812_iso_1_len_1395_ver_3 82 KRIIHRDIERQRRQEMANLYASLRSLLPLeY---IKGKRSIADHMQEAVNYIKYLQ 134 6888***********************77...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.33E-12	80	138	No hit	No description
PROSITE profile	PS50888	14.602	81	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-14	81	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-10	82	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-11	82	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-6	87	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MFDPLQPSDD LDYYQIPYIH PPPPAPMFEQ ATISNNNNNN FNITTTGKRL RQPEKKSSPQ 60 FHEVVGNNII NDDGSCTDHK LKRIIHRDIE RQRRQEMANL YASLRSLLPL EYIKGKRSIA 120 DHMQEAVNYI KYLQKNIEEL GVRRDEIMKK ASSSNSKTNS NNNGSSASED GSGVSVSPNS 180 STVTVNLCRD GALEILISGS CNLKELTVNF PISKVLKKLV EEGFNVISCI STKSNEFVTV 240 HRILTAEVRD TKCINIMELQ QKLSNIINRR QSHADK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	93	KRIIHRDIERQRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076502.2	9e-56	transcription factor bHLH120-like
TrEMBL	A0A068UCB9	1e-50	A0A068UCB9_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109