PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_11766_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 217aa MW: 25441.4 Da PI: 10.1892

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11766_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.3e-19	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W++++r g++R +k+c++rw +yl cra_locus_11766_iso_2_len_949_ver_3 20 KGPWTAEEDRLLIEYVKLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYL 67 79********************************************97 PP
2	Myb_DNA-binding	53.5	5.4e-17	73	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ cra_locus_11766_iso_2_len_949_ver_3 73 RGQITPHEESIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117 7888****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.638	15	71	IPR017930	Myb domain
SuperFamily	SSF46689	1.48E-30	17	114	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-17	19	69	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-18	20	67	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-23	21	74	IPR009057	Homeodomain-like
CDD	cd00167	1.66E-11	22	67	No hit	No description
SMART	SM00717	1.5E-14	72	120	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.493	72	122	IPR017930	Myb domain
Pfam	PF00249	6.8E-14	73	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-24	75	122	IPR009057	Homeodomain-like
CDD	cd00167	2.19E-9	77	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAAASHEPLG WGMVEEGWRK GPWTAEEDRL LIEYVKLHGE GRWNSVSRLA GLKRNGKSCR 60 LRWVNYLRPD LKRGQITPHE ESIIVELHAR WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK 120 KVKSPNDNNS EKVRARLLKR QQYHQQQQQH QQQQQMHQAQ DQILDMKRLM SFLEENEDHV 180 SSAAAAGGGG IIFSDTSNEH QNHHHQQQQQ SKDFFIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-27	20	122	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285781.2	4e-92	transcription repressor MYB6
TrEMBL	R0GP77	8e-91	R0GP77_9BRAS; Uncharacterized protein
STRING	XP_006285781.1	1e-91	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154