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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11625_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 546aa MW: 62059 Da PI: 7.314 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 276.1 | 1.1e-84 | 128 | 498 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetsekn 73 v Ll+ Ae + ++++e+a++lL++ +++s +g++++R++ yf AL++r+ r++ ++ k l +++ + cra_locus_11625_iso_1_len_1635_ver_3 128 VMYLLASAEKIVDNQFERARKLLNECDKMSSAKGKAIERVVYYFSGALHERIDRKTGTVTpKGLGNKQSL--D 198 567999************************************************4444440333333332..3 PP GRAS 74 sseelaalkl....fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegpps 141 ++l+ lk ++ P+ ++ +++a qa+l+ v ++++HiiD++i G+++ ++qaLa +R + cra_locus_11625_iso_1_len_1635_ver_3 199 ILDSLMDLKPdiiaMQKYVPFSQVWQFAAVQAVLDHVGDARKIHIIDMEIRTGMHYTIMMQALAaQRCVPLEY 271 444444443344579*************************************************66779999* PP GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214 l++T+vg s+ ++eetg++L +fAe+l++++ f++++++++ d++ + L+vk++Ea+a+ l l+ cra_locus_11625_iso_1_len_1635_ver_3 272 LKVTAVGT---RSRGKIEETGRQLISFAESLNLKLYFDIVMVDDILDFHERLLEVKTDEAVAIYAELTFLFLV 341 ********...5899*************************************************999777665 PP GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 s +++ + +++++k+++P+v+v+ve ea+hns+ Fl+rfle+l ++ a+fd+le l +++ r++ E cra_locus_11625_iso_1_len_1635_ver_3 342 ----SRQDRLELLMNVIKRINPRVMVMVEVEANHNSPVFLNRFLETLLHFGAFFDCLEDCLKHDEASRMFTEG 410 ....66666777************************************************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359 +++++ i+ +va+eg+er+ rh t++ W++ + ++G+ +v+ls + + qakl+l++++ + +ve + +sl+ cra_locus_11625_iso_1_len_1635_ver_3 411 VYFSQGIRTIVAAEGEERTIRHVTMNVWKMFFARFGMVQVELSMSSVYQAKLMLNNFAcGSSCTVETDGKSLI 483 **********************************************************9999*********** PP GRAS 360 lgWkdrpLvsvSaWr 374 gWk+ p+ s+SaW+ cra_locus_11625_iso_1_len_1635_ver_3 484 VGWKGTPIHSLSAWK 498 **************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.676 | 101 | 477 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-82 | 128 | 498 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
XCSNDSFFDI ASNSPSPSFG EVFTENSQLI ESRKEGSYTE SLKILKNYQN RFRRLSAAPK 60 RKFPAYDCVC TNVVFKKLSV AEIIKLAAEK IIQGSSQHSA DESSVVSHPY ASSFLGYSEE 120 DYNDVELVMY LLASAEKIVD NQFERARKLL NECDKMSSAK GKAIERVVYY FSGALHERID 180 RKTGTVTPKG LGNKQSLDIL DSLMDLKPDI IAMQKYVPFS QVWQFAAVQA VLDHVGDARK 240 IHIIDMEIRT GMHYTIMMQA LAAQRCVPLE YLKVTAVGTR SRGKIEETGR QLISFAESLN 300 LKLYFDIVMV DDILDFHERL LEVKTDEAVA IYAELTFLFL VSRQDRLELL MNVIKRINPR 360 VMVMVEVEAN HNSPVFLNRF LETLLHFGAF FDCLEDCLKH DEASRMFTEG VYFSQGIRTI 420 VAAEGEERTI RHVTMNVWKM FFARFGMVQV ELSMSSVYQA KLMLNNFACG SSCTVETDGK 480 SLIVGWKGTP IHSLSAWKVK XDNNKTCKKL VMAVKDSLSL DFLVVYEVVH FREAKIYKVT 540 VKQICX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-31 | 135 | 500 | 27 | 381 | Protein SCARECROW |
5b3h_A | 6e-31 | 135 | 500 | 26 | 380 | Protein SCARECROW |
5b3h_D | 6e-31 | 135 | 500 | 26 | 380 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027164748.1 | 0.0 | DELLA protein RGL2-like | ||||
TrEMBL | A0A068TR45 | 0.0 | A0A068TR45_COFCA; Uncharacterized protein | ||||
STRING | XP_009800222.1 | 1e-174 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3427 | 21 | 49 |