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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11485_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20522.7 Da PI: 4.4319 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.7 | 9.4e-16 | 3 | 47 | 7 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +r+ ++ k +++i KA+ELS+LCd+ v+ +i s++g+ ++++ cra_locus_11485_iso_2_len_876_ver_3 3 QRRSLSYRKGKETIKRKAKELSILCDIPVCAVITSPNGETETWPT 47 69*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.409 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.03E-13 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-11 | 3 | 45 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MRQRRSLSYR KGKETIKRKA KELSILCDIP VCAVITSPNG ETETWPTSLS ELKPIFQMYR 60 EKIQFFDRQG YGDPAEDNYG KGTDEIMLFD HDPADENYDQ ETEEDDEDEI MEWLNDKILA 120 VNDRIRVLKE IDVKKLPWRS GSVTEFQSDC TCLSSSSAHS AQTNGAESIS IGRESHFSD |