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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11431_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 199aa MW: 23271.6 Da PI: 9.3728 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.2 | 5.9e-31 | 7 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 +p GfrF+Ptdeel+ +yLk+kv + ++++ ++i+e+++++++P ++p +++ yfF++r+ t + cra_locus_11431_iso_1_len_999_ver_3 7 VPIGFRFRPTDEELIIHYLKRKVLSLPFPA-SIIPEFHVFQTNPLHFPG---DPRENRYFFCNRKILPITTIVS 76 589***************************.89***************3...345678******9998888888 PP NAM 75 nratksgyWkatgkdkevlsk..kgelvglkktLvfy....kgrapkgektdWvmheyrl 128 r sgyWk tg++++++s ++++vg+k++L+fy k+++ +g +dWvm+ey l cra_locus_11431_iso_1_len_999_ver_3 77 VRD-GSGYWKLTGRQRKIISPaaNNRVVGTKRSLAFYhyqgKQKHGHGLMSDWVMDEYCL 135 886.89*************99888999**********8844445556669********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-37 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.531 | 7 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-20 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDSIIRVPIG FRFRPTDEEL IIHYLKRKVL SLPFPASIIP EFHVFQTNPL HFPGDPRENR 60 YFFCNRKILP ITTIVSVRDG SGYWKLTGRQ RKIISPAANN RVVGTKRSLA FYHYQGKQKH 120 GHGLMSDWVM DEYCLLAPDE QQQNVLQIGD WFVYCIRRKK RKTKNQYSSR KDESSSLCLS 180 EIIDVSCNNE LDQEANSEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-18 | 5 | 160 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-18 | 5 | 160 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-18 | 5 | 160 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-18 | 5 | 160 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-18 | 5 | 160 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-18 | 5 | 160 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-18 | 5 | 160 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-18 | 5 | 160 | 18 | 169 | NAC domain-containing protein 19 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13250 | 13 | 18 |