PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1141_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 866aa MW: 95163.6 Da PI: 6.2366

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1141_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.9e-06	237	259	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C++f r G Ck G++C+F H cra_locus_1141_iso_5_len_3579_ver_3 237 RIPCKDFIR-GNCKWGASCRFLHH 259 669****.***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.122	234	261	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.06E-5	234	259	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0015	234	260	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-5	239	259	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.676	285	311	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.3	286	310	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
LKPKDQSRWS SLETHRVAEK IENVYNDGRD ASQIKEHCRD YSHYKSMSPG FDDGFKESTT 60 APLKTPWVKL IDIWKGAEAA AGTMPEAEAT AEAGAETGAG TAAVVGVEAE VGVGAGPRRX 120 QGAKAGVVVL FMIANVNHMD GMTEEVVLEY HLKSVEIFQQ GSAGEGVNXR FLHPENISRM 180 DRDCPEKGLA QRSASGIEHG HGMRYSKAEG AGAQSWGRVS DVTYGEEEPL GNRNRGRIPC 240 KDFIRGNCKW GASCRFLHHT SSGDNDDQGG RNTSFDRDRE HQANESGKSM CKYFLAGSCH 300 RVNCRFSHDG RPTASNRESR PHDNDDEGHG LVKGGRWSAP SWDEMGKVSM GATRLSENLS 360 ANRTNADSIA VDVKDSRWDY ESRIWGDSQP KEKASANVDY PLHKWDEDGG DAGFIRSTGT 420 ENFNDGREHL TSQDLESTNI DTISAFAHEQ NSGQETSNHH FPMIAKHPEV SIKSDFQQHQ 480 NVVNDNVAKA FSFGGLKGGK DSTNTINTVI VSGQTLDQNG AGNLFKPSLV ANDNMLPYQA 540 SAQNIDLNGP SQLLHTTLNL QSQIQSNHNE AAKKPVMEED KGPQSFPNPA PTGQDAQIAY 600 LAASLAQKVV NEQLQPNPHT ALNSQTSAQL MSSLQSLVPS LNMTYVHPSS RPSDHSNLLH 660 DATEPGNSSV PHDSLPHPFE QENQLPLEEF SPFSIGDTEA KKALEDGSSK VQYNESLKSE 720 QQDVTAAPKI EDIHRNETAE CKGKQENIQR KGVNDPGKVD DADVGNKDEK EMRLFKNALI 780 EFVKVTLKPT WKEGRMSREV HKTVVKKVVD KVTSSITADN VPKTQDRIEQ YLSHSKSKIT 840 KLVQVSLCYC RSVYVIAYPA LNKFLG

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

LKPKDQSRWS SLETHRVAEK IENVYNDGRD ASQIKEHCRD YSHYKSMSPG FDDGFKESTT  60
APLKTPWVKL IDIWKGAEAA AGTMPEAEAT AEAGAETGAG TAAVVGVEAE VGVGAGPRRX  120
QGAKAGVVVL FMIANVNHMD GMTEEVVLEY HLKSVEIFQQ GSAGEGVNXR FLHPENISRM  180
DRDCPEKGLA QRSASGIEHG HGMRYSKAEG AGAQSWGRVS DVTYGEEEPL GNRNRGRIPC  240
KDFIRGNCKW GASCRFLHHT SSGDNDDQGG RNTSFDRDRE HQANESGKSM CKYFLAGSCH  300
RVNCRFSHDG RPTASNRESR PHDNDDEGHG LVKGGRWSAP SWDEMGKVSM GATRLSENLS  360
ANRTNADSIA VDVKDSRWDY ESRIWGDSQP KEKASANVDY PLHKWDEDGG DAGFIRSTGT  420
ENFNDGREHL TSQDLESTNI DTISAFAHEQ NSGQETSNHH FPMIAKHPEV SIKSDFQQHQ  480
NVVNDNVAKA FSFGGLKGGK DSTNTINTVI VSGQTLDQNG AGNLFKPSLV ANDNMLPYQA  540
SAQNIDLNGP SQLLHTTLNL QSQIQSNHNE AAKKPVMEED KGPQSFPNPA PTGQDAQIAY  600
LAASLAQKVV NEQLQPNPHT ALNSQTSAQL MSSLQSLVPS LNMTYVHPSS RPSDHSNLLH  660
DATEPGNSSV PHDSLPHPFE QENQLPLEEF SPFSIGDTEA KKALEDGSSK VQYNESLKSE  720
QQDVTAAPKI EDIHRNETAE CKGKQENIQR KGVNDPGKVD DADVGNKDEK EMRLFKNALI  780
EFVKVTLKPT WKEGRMSREV HKTVVKKVVD KVTSSITADN VPKTQDRIEQ YLSHSKSKIT  840
KLVQVSLCYC RSVYVIAYPA LNKFLG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5255	20	29