PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11362_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 398aa    MW: 41709.7 Da    PI: 8.765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11362_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.1e-115075227
                                          -S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                          ++++C+++ +tG+Ck+G +CkF+H++
  cra_locus_11362_iso_6_len_2201_ver_3 50 GEKECSYYVKTGQCKFGVTCKFHHPQ 75
                                          6789********************97 PP
2zf-CCCH39.21.1e-12220246127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           +++++C+++++tG Ck+G++C+++H+p
  cra_locus_11362_iso_6_len_2201_ver_3 220 PGQPECQYYMKTGDCKFGASCRYHHPP 246
                                           5789*********************97 PP
3zf-CCCH36.86.4e-12269292427
                                           ---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                           ++C+++a++G Ck+G++CkF+H++
  cra_locus_11362_iso_6_len_2201_ver_3 269 PICSHYAQNGVCKFGPSCKFNHPM 292
                                           89********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.4E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0514876IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-65176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-45474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145219247IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6219246IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-10221246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5223246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4225246IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6265292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925265293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6267295IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9269292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5270290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
XIYGYPMRPV STFCPFQFPL AFFVFFLNIY FDYMLEALAR LXLKKFLSQG EKECSYYVKT  60
GQCKFGVTCK FHHPQPAGVQ VQAPAPGPGP LPAPAAVPAP AIYPTVQSPS VQSSQQYGVV  120
AGNWPVARPT LLPGSYIPGT FGPVLLPPGM VPVPGWTSYP APVSPAASSS TQPTVGAGPV  180
YGITQLSPSA PAYTGQYLPV SSSAGPSGSS HKENVFPERP GQPECQYYMK TGDCKFGASC  240
RYHHPPEWSA DKTSFVLTPM GLPLRPDAPI CSHYAQNGVC KFGPSCKFNH PMGTLSYSPS  300
ASSLADMPVA PYPVGSSMGT LAPSSSSSDL RPELMSGSSK DAFSGRMSSM SSSSGPVGSL  360
FSKSGTVPRS SSQQPGQGSS TSSGSSSTAH GSEVRTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267356.11e-167PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
TrEMBLA0A314KY391e-162A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32
STRINGPGSC0003DMT4000583231e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459