PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_11344_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 272aa MW: 31301.2 Da PI: 9.7831

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11344_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37	6.2e-12	8	70	32	98
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +kt++l+ ++g W + l ++ +r vl+kGWk+Fv+ +k+ f+vFk++g+sef v +f+ cra_locus_11344_iso_1_len_1002_ver_3 8 LKKTVVLKVPNGGNWIIDL--VNRENRSVLEKGWKDFVEFYSIKQCYFLVFKYKGNSEF--SVIIFD 70 6789*************..9999999*************************9999..888877 PP
2	B3	56.5	5e-18	173	269	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeF 68 f+ + ps+v+ l++p +fa+++ g ++ l +e ++gr+ +v + r +s ++GWkeF cra_locus_11344_iso_1_len_1002_ver_3 173 FIVFMQPSYVSLFFVLSIPLRFAKDYlsieeGARRWCKLSLCVEGKRGRERKVIC--RIQSANAKVSSGWKEF 243 4455566666666899********98877666669999***********..99999999**** PP HHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 69 vkangLkegDfvvFkldgrsefelvvkv 96 vk+n Lk+gD++vF+l+ ++ f +v + cra_locus_11344_iso_1_len_1002_ver_3 244 VKENCLKVGDVCVFELEAKNAF--KVII 269 *************9987777..5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	0.073	1	72	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.28	1	72	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.5E-16	2	72	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.51E-15	3	72	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.9E-9	7	70	IPR003340	B3 DNA binding domain
CDD	cd10017	4.96E-10	10	70	No hit	No description
Gene3D	G3DSA:2.40.330.10	4.0E-23	165	271	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.46E-23	168	271	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.25E-20	171	271	No hit	No description
SMART	SM01019	2.2E-13	172	272	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-16	173	270	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.901	173	272	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MTRYGQDLKK TVVLKVPNGG NWIIDLVNRE NRSVLEKGWK DFVEFYSIKQ CYFLVFKYKG 60 NSEFSVIIFD PSAVEIEYPP MKNTETSDET EGAEMLVSTD TASSSSESDH LQVKKMKRVH 120 KSATSSKHQI KKKQMRCGTS SKMHLENQST VYAKDEYISY QKAKAFTSKN PFFIVFMQPS 180 YVSLFFVLSI PLRFAKDYLS IEEGARRWCK LSLCVEGKRG RERKVICRIQ SANAKVSSGW 240 KEFVKENCLK VGDVCVFELE AKNAFKVIIY RA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	2e-13	148	259	24	127	B3 domain-containing transcription factor VRN1
4i1k_B	2e-13	148	259	24	127	B3 domain-containing transcription factor VRN1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA759	18	93