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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_113381_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 325aa MW: 36925.1 Da PI: 5.0367 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.7 | 8.1e-10 | 4 | 36 | 19 | 51 |
HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyeyss 51 +lKKAeE+ v Cd++va++ fs+ g++ +s+ cra_locus_113381_iso_1_len_1203_ver_3 4 SLLKKAEEIKVSCDVDVALVAFSPAGRISQFSN 36 69**************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.25 | 1 | 38 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-11 | 4 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-9 | 4 | 34 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
XRISLLKKAE EIKVSCDVDV ALVAFSPAGR ISQFSNKERM EDFLLRYTSL PAEKRLGHVK 60 DVKKKMEKLK KLDHIKNEDL RAHFLQKQIQ NLESQIKQKE MEVQIAEAFL QNFEVDPDQS 120 SLQQISWAEN NVLQAIETIK LGQKEKLARE NEGGNNFHPG GSISPVLPQQ LQMDTPNIIS 180 EEKLKEILDK GKAKVAGDGY ITTENNYHIL EASGRNRMGI SIQEPNETFN RQTFVPPPQI 240 NAEQYFAQQY PPLNYDHDFQ LWEQAQLNAS FESFYMGESS NSSIVQANNN FGHGNLYAIP 300 EYDENGNNGF NSKDDNMFPP PSSGV |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3785 | 12 | 19 |