PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

cra_locus_11305_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 194aa MW: 21877.7 Da PI: 7.7446

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11305_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.7	1.1e-39	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +CaaCk+l+rkC +C +apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++slvyeAe+r++dPvy cra_locus_11305_iso_1_len_860_ver_3 12 SCAACKFLKRKCILNCQFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVPEEQREDTVNSLVYEAEVRLKDPVY 85 6*********************************************************************** PP DUF260 75 Gavgvilklqqqleqlkaelallke 99 G++g i +lq+++ +l+++l l+++ cra_locus_11305_iso_1_len_860_ver_3 86 GCIGAIASLQKKMFELQHDLLLARA 110 ****************9988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.256	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-39	12	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MKSSQEPRSS SSCAACKFLK RKCILNCQFA PYFRSDEPKK FAKVHKVFGA SNVSKILNEV 60 PEEQREDTVN SLVYEAEVRL KDPVYGCIGA IASLQKKMFE LQHDLLLARA RLAYCVTTTA 120 KLPAAVSSCN NNNYYNSQFY FDDHHQPPPY GEIPPPSSAV GLEQQQQQSS FEQNSMINTS 180 QNGFLYDFGQ LPFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	7	126	6	126	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	7	126	6	126	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027104297.1	4e-76	LOB domain-containing protein 21-like
Refseq	XP_027110763.1	4e-76	LOB domain-containing protein 21-like
Refseq	XP_027162239.1	4e-76	LOB domain-containing protein 21
Swissprot	Q9SRL8	4e-60	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A068UZL3	7e-75	A0A068UZL3_COFCA; Uncharacterized protein
STRING	XP_009630762.1	1e-67	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]