PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

cra_locus_11298_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 363aa MW: 40148.9 Da PI: 7.4433

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_11298_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.7e-07	121	140	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd+C FaHg cra_locus_11298_iso_1_len_1284_ver_3 121 CPDFRK-GGCKKGDSCEFAHG 140 9***.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0029	115	141	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.15	116	142	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-5	121	142	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.6E-5	121	140	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	16	150	173	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.071	150	174	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
TAGLGRLDFS NDQTTATIHS PFSVTPTGNA TGLEIPFEAF AALRRYLPSN TVPDDDVDSE 60 NDDLDIPVDA FSCDHFRMYD FKVRKCMRAR SHDWTECPFA HPGEKARRRD PRKYHYSGTG 120 CPDFRKGGCK KGDSCEFAHG VFECWLHPAR YRTQPCKDGT HCRRRVCFFA HTPDQLRVLP 180 HTETYDRLGC NSPGRLCFDT GLNMNKGTFG LSPTSVFYSP PPSPPSESSP PMSPSGAMSF 240 NTMSSLADSM RNLQIGTTRI TVGSPSYSWG TIQMGSGFCS PRSPSAIRPG FSSLPSTPTR 300 IQTRSGLGGF DLLEKSHEEE PLMERVESGR DLRAKIYAKL SKENSLDSDG AGPDFGWISE 360 LVK

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

TAGLGRLDFS NDQTTATIHS PFSVTPTGNA TGLEIPFEAF AALRRYLPSN TVPDDDVDSE  60
NDDLDIPVDA FSCDHFRMYD FKVRKCMRAR SHDWTECPFA HPGEKARRRD PRKYHYSGTG  120
CPDFRKGGCK KGDSCEFAHG VFECWLHPAR YRTQPCKDGT HCRRRVCFFA HTPDQLRVLP  180
HTETYDRLGC NSPGRLCFDT GLNMNKGTFG LSPTSVFYSP PPSPPSESSP PMSPSGAMSF  240
NTMSSLADSM RNLQIGTTRI TVGSPSYSWG TIQMGSGFCS PRSPSAIRPG FSSLPSTPTR  300
IQTRSGLGGF DLLEKSHEEE PLMERVESGR DLRAKIYAKL SKENSLDSDG AGPDFGWISE  360
LVK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027081505.1	1e-165	zinc finger CCCH domain-containing protein 23-like
Swissprot	Q9M0G2	1e-110	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A068UIE2	1e-163	A0A068UIE2_COFCA; Uncharacterized protein
STRING	XP_009784195.1	1e-147	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]