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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_112403_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 193aa MW: 22184.1 Da PI: 8.8053 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.7 | 7.7e-56 | 19 | 160 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatg 71 lppGfrFhPtdee++++yL++kv ++ +++ ++i evd++k+ePwdLpk++k +ekew+fF++rd+ky+tg cra_locus_112403_iso_3_len_1012_ver_3 19 LPPGFRFHPTDEEIISYYLTEKVMNSGFSA-KAIGEVDMNKCEPWDLPKRAKMgSEKEWFFFCQRDRKYPTG 89 79***************************9.89***************755542678*************** PP NAM 72 krknratksgyWkatgkdkevlskkgel.............vglkktLvfykgrapkgektdWvmheyrle 129 r+nrat+sgyWkatgkdke++++++++ vg+kktLvfykgrapkgek++Wvmheyrle cra_locus_112403_iso_3_len_1012_ver_3 90 MRTNRATESGYWKATGKDKEIYNSNNNKsgkgvggggncvvVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 160 ***********************955556778888888999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-57 | 15 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.825 | 19 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-30 | 20 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MVLNINEEDR EDDHDLMDLP PGFRFHPTDE EIISYYLTEK VMNSGFSAKA IGEVDMNKCE 60 PWDLPKRAKM GSEKEWFFFC QRDRKYPTGM RTNRATESGY WKATGKDKEI YNSNNNKSGK 120 GVGGGGNCVV VGMKKTLVFY KGRAPKGEKS NWVMHEYRLE GRFSYYNFPK GAVKVSTYLA 180 IGCFSNYNFF SFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-46 | 12 | 159 | 13 | 145 | NAC domain-containing protein 19 |
3swm_B | 1e-46 | 12 | 159 | 13 | 145 | NAC domain-containing protein 19 |
3swm_C | 1e-46 | 12 | 159 | 13 | 145 | NAC domain-containing protein 19 |
3swm_D | 1e-46 | 12 | 159 | 13 | 145 | NAC domain-containing protein 19 |
3swp_A | 1e-46 | 12 | 159 | 13 | 145 | NAC domain-containing protein 19 |
3swp_B | 1e-46 | 12 | 159 | 13 | 145 | NAC domain-containing protein 19 |
3swp_C | 1e-46 | 12 | 159 | 13 | 145 | NAC domain-containing protein 19 |
3swp_D | 1e-46 | 12 | 159 | 13 | 145 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277068.1 | 2e-89 | PREDICTED: NAC domain-containing protein 92 | ||||
Refseq | XP_010653830.1 | 2e-89 | PREDICTED: NAC domain-containing protein 92 | ||||
Swissprot | Q9FK44 | 4e-82 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A1Q3D0Z8 | 1e-88 | A0A1Q3D0Z8_CEPFO; NAM domain-containing protein | ||||
TrEMBL | A0A2P5FRE8 | 2e-88 | A0A2P5FRE8_TREOI; NAC domain containing protein | ||||
STRING | VIT_08s0007g07640.t01 | 7e-89 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Publications ? help Back to Top | |||
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