PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11057_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 847aa    MW: 92744.9 Da    PI: 6.8966
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11057_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.48.8e-07432452526
                                           --SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                            Cr++++ G C+ G++CkF+H+
  cra_locus_11057_iso_2_len_3603_ver_3 432 YCRHYLK-GRCQEGSKCKFSHD 452
                                           5******.*************7 PP
2zf-CCCH20.87e-07486506525
                                           --SGGGGTS--TTTTT-SS-S CS
                               zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                                           +C+++   G+C++G+ C F+H
  cra_locus_11057_iso_2_len_3603_ver_3 486 PCNNYVTKGFCSRGADCLFSH 506
                                           7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15427454IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5428452IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-4428453IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4432452IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4432452IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.436456483IPR000571Zinc finger, CCCH-type
SMARTSM003560.04456482IPR000571Zinc finger, CCCH-type
SMARTSM003560.11484508IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5485510IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.07486509IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4486510IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MSHCNALQSV PQHKKRDDDD KTGEAAEEKK LVGVNRLGEA AENNELLDHD PMETESLLLL  60
QKSSAGVAKE ITSSQDNNVN SKLIEGDMLD SMDMITEANN NNNVDSFMEN NQAIDSVVDL  120
ITGQKDGCSV ANTTAVSLMR QEEVANQAFF CEVAEAVDSS LEMDMVAEFS RPIEDGKKNS  180
TERNTWPEGI ENQLQLKEKE LENLISTSSA MNSSICLTAD DDIEEGEISG DVGIYDEAMH  240
FLLDDDAISL EEKKVEEGQI HKDNIDKEKM VCDGGGIGLG KYGRCISASL NVDNNNDIMK  300
LDRQSTRRDP DIYDGHLAER NMEIKKVDGH DIVHETGQIM DQVFGVRGTD NCAASVKVLT  360
SHGQVISDGT TEVTNEKDNT VETKKRKKGP LSKERKAKKK KKERIKRAEK NRKLGVKRLK  420
LQPIVKQKTV TYCRHYLKGR CQEGSKCKFS HDTIPLTKSQ PCCYFARHSC MKGDDCPFDH  480
QLSKYPCNNY VTKGFCSRGA DCLFSHKMED KGGSSTTPNV PKPEFRSPFQ TSDSNSKKQV  540
TLCSNPPQDS SGKSLEKKVA QHLQKPAVQV PKGISFFSSP QLSPGVTGKH EQTAQPLKEV  600
NGVKIGHKIN SSLGSGPKSN DSMMRVPLRT PKGINFLSFG KAHPLESGSN KDQGISESSL  660
SEPNESTLRR SPPRYDGGAK TENQSGQSSL ESETNKCKAA DMISPAPRPQ GMKFLAFGEI  720
PRDNTNAVGQ AGLVCCNTNS GLPLVQEREN VLDGLKFTNE MPNRLASSPN PFCQSSNQCG  780
PRNAVGISSS QKISLLSNTP NSVQKALQST LAFAAKFDSQ IKLDQAIGTS GVSTKPKKXL  840
NLIEKAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383387KKRKK
2385401RKKGPLSKERKAKKKKK
3394402RKAKKKKKE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720