PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_11052_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family SBP
Protein Properties Length: 255aa    MW: 28782.9 Da    PI: 9.8628
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_11052_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP50.94e-1614444777
                                          SSEEETTT--SS--S-STTTT-------S-- CS
                                   SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77
                                          srfh l efD++krsCr+rLa+hnerrrk+q
  cra_locus_11052_iso_1_len_1261_ver_3 14 SRFHLLGEFDNGKRSCRKRLAGHNERRRKPQ 44
                                          9****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.845143IPR004333Transcription factor, SBP-box
PfamPF031101.1E-81442IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.33E-121446IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.106.9E-51430IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
XGRGTVLSAY TLASRFHLLG EFDNGKRSCR KRLAGHNERR RKPQLGAHLG SRFFEMTLLR  60
STSFRSSETL PGSFYYQERN VCYDHSSKHI KLEQVPIDIS QLAEPENGQS PSNSRPILHL  120
IRNQHYLETC NDGPVELELP MLPDSRCALS LLSANSHNNH SMGVSKRTSP STRENQNTLV  180
GVYQKSAKAF TGNRHFSSGT QNQVGSPMVR SGFQKDGHIQ TSDYTMDLFQ LSSHLQRVEK  240
LKSDMQMKQE SYSSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095530.12e-50squamosa promoter-binding-like protein 6
TrEMBLA0A068TVY41e-50A0A068TVY4_COFCA; Uncharacterized protein